Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 BCYRN1-201ENST00000418539 200 ntBASIC13.44□□□□□ -0.26
ABCA1O95477 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA1O95477 AC104989.1-201ENST00000519711 778 ntBASIC13.44□□□□□ -0.26
ABCA1O95477 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA1O95477 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.44□□□□□ -0.26
ABCA1O95477 AC010319.3-201ENST00000597028 470 ntBASIC13.44□□□□□ -0.26
ABCA1O95477 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
ABCA1O95477 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA1O95477 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA1O95477 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC13.44□□□□□ -0.26
ABCA1O95477 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA1O95477 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 SERBP1P3-201ENST00000459980 809 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 AL033527.5-201ENST00000641382 801 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 SDHAP3-202ENST00000515467 728 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.43□□□□□ -0.26
ABCA1O95477 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
ABCA1O95477 RRP7BP-205ENST00000566851 833 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.43□□□□□ -0.26
ABCA1O95477 WFDC1-204ENST00000613603 549 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
ABCA1O95477 MIR6787-201ENST00000616675 61 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 AL109936.8-201ENST00000641772 604 ntBASIC13.43□□□□□ -0.26
ABCA1O95477 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA1O95477 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.43□□□□□ -0.26
ABCA1O95477 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA1O95477 REXO1L6P-201ENST00000603433 1515 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 TNRC18P3-201ENST00000441896 2691 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.42□□□□□ -0.26
ABCA1O95477 AL589987.1-201ENST00000453380 819 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms