Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
SEMA3DO95025 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
SEMA3DO95025 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 AC004987.2-201ENST00000395959 1148 ntBASIC15.36■□□□□ 0.05
SEMA3DO95025 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SEMA3DO95025 UPF3AP3-201ENST00000420996 769 ntBASIC15.36■□□□□ 0.05
SEMA3DO95025 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
SEMA3DO95025 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.36■□□□□ 0.05
SEMA3DO95025 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.36■□□□□ 0.05
SEMA3DO95025 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.36■□□□□ 0.05
SEMA3DO95025 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 AC026979.3-201ENST00000607315 403 ntBASIC15.36■□□□□ 0.05
SEMA3DO95025 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.36■□□□□ 0.05
SEMA3DO95025 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.36■□□□□ 0.05
SEMA3DO95025 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SEMA3DO95025 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 AC092384.3-202ENST00000564646 2873 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 RPSAP43-201ENST00000402237 625 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 AL627223.1-201ENST00000416693 442 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 AC005237.2-201ENST00000434368 219 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.35■□□□□ 0.05
SEMA3DO95025 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.35■□□□□ 0.05
SEMA3DO95025 RARRES2P9-201ENST00000565168 469 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 AC010327.4-202ENST00000591484 748 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
SEMA3DO95025 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 AP3S2-216ENST00000617003 1561 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SEMA3DO95025 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SEMA3DO95025 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.35■□□□□ 0.05
SEMA3DO95025 AC134407.2-201ENST00000625089 1978 ntBASIC15.35■□□□□ 0.05
SEMA3DO95025 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SEMA3DO95025 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SEMA3DO95025 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SEMA3DO95025 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.34■□□□□ 0.05
SEMA3DO95025 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms