Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VSX1Q9NZR4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.89■□□□□ 0.94
VSX1Q9NZR4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VSX1Q9NZR4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 AL592293.1-201ENST00000502889 1188 ntBASIC20.88■□□□□ 0.93
VSX1Q9NZR4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.88■□□□□ 0.93
VSX1Q9NZR4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 RARRES2P2-201ENST00000394842 485 ntBASIC20.87■□□□□ 0.93
VSX1Q9NZR4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VSX1Q9NZR4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VSX1Q9NZR4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 RPS2P7-201ENST00000447334 885 ntBASIC20.85■□□□□ 0.93
VSX1Q9NZR4 SPCS2P3-201ENST00000500401 656 ntBASIC20.85■□□□□ 0.93
VSX1Q9NZR4 AC018755.3-202ENST00000596210 929 ntBASIC20.85■□□□□ 0.93
VSX1Q9NZR4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.85■□□□□ 0.93
VSX1Q9NZR4 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 HSD17B1P1-201ENST00000590052 955 ntBASIC20.84■□□□□ 0.93
VSX1Q9NZR4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VSX1Q9NZR4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VSX1Q9NZR4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.83■□□□□ 0.93
VSX1Q9NZR4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.83■□□□□ 0.93
VSX1Q9NZR4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.83■□□□□ 0.92
VSX1Q9NZR4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
VSX1Q9NZR4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
VSX1Q9NZR4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.82■□□□□ 0.92
VSX1Q9NZR4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VSX1Q9NZR4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 HLA-L-211ENST00000482052 1765 ntBASIC20.81■□□□□ 0.92
VSX1Q9NZR4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VSX1Q9NZR4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.8■□□□□ 0.92
VSX1Q9NZR4 AC087393.1-201ENST00000582896 145 ntBASIC20.8■□□□□ 0.92
VSX1Q9NZR4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VSX1Q9NZR4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms