Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 AC131281.2-201ENST00000520478 145 ntBASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 AC010997.5-201ENST00000609182 354 ntBASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.49■■□□□ 1.35
TM9SF3Q9HD45 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TM9SF3Q9HD45 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TM9SF3Q9HD45 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TM9SF3Q9HD45 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.47■■□□□ 1.35
TM9SF3Q9HD45 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.47■■□□□ 1.35
TM9SF3Q9HD45 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TM9SF3Q9HD45 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 MTDHP2-201ENST00000601468 714 ntBASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.46■■□□□ 1.35
TM9SF3Q9HD45 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 AC091060.1-201ENST00000623524 1766 ntBASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 AL117332.1-201ENST00000622628 974 ntBASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
TM9SF3Q9HD45 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR638-201ENST00000385237 100 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR935-201ENST00000401179 91 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR6724-1-201ENST00000616420 92 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR6724-2-201ENST00000616483 92 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR6724-4-201ENST00000617390 92 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 MIR6724-3-201ENST00000622482 92 ntBASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.44■■□□□ 1.34
TM9SF3Q9HD45 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TM9SF3Q9HD45 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 MIR3621-201ENST00000580529 85 ntBASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TM9SF3Q9HD45 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 AL136116.3-201ENST00000402907 1138 ntBASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 AL139246.5-201ENST00000606645 996 ntBASIC23.41■■□□□ 1.34
TM9SF3Q9HD45 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
TM9SF3Q9HD45 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TM9SF3Q9HD45 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TM9SF3Q9HD45 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.4■■□□□ 1.34
TM9SF3Q9HD45 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
TM9SF3Q9HD45 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.39■■□□□ 1.33
TM9SF3Q9HD45 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
TM9SF3Q9HD45 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms