Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.46■□□□□ 0.71
SSX3Q99909 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX3Q99909 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SSX3Q99909 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSX3Q99909 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.45■□□□□ 0.7
SSX3Q99909 AC010980.1-201ENST00000587192 1142 ntBASIC19.45■□□□□ 0.7
SSX3Q99909 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
SSX3Q99909 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX3Q99909 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.44■□□□□ 0.7
SSX3Q99909 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX3Q99909 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX3Q99909 RARRES2P1-201ENST00000474487 481 ntBASIC19.44■□□□□ 0.7
SSX3Q99909 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX3Q99909 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSX3Q99909 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.44■□□□□ 0.7
SSX3Q99909 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.44■□□□□ 0.7
SSX3Q99909 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX3Q99909 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX3Q99909 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SSX3Q99909 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX3Q99909 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.43■□□□□ 0.7
SSX3Q99909 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SSX3Q99909 LINC00543-201ENST00000567234 1845 ntBASIC19.43■□□□□ 0.7
SSX3Q99909 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.43■□□□□ 0.7
SSX3Q99909 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.42■□□□□ 0.7
SSX3Q99909 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SSX3Q99909 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX3Q99909 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.41■□□□□ 0.7
SSX3Q99909 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.41■□□□□ 0.7
SSX3Q99909 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.41■□□□□ 0.7
SSX3Q99909 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX3Q99909 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SSX3Q99909 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 AC133561.1-201ENST00000568600 2415 ntBASIC19.4■□□□□ 0.7
SSX3Q99909 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.4■□□□□ 0.7
SSX3Q99909 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX3Q99909 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.4■□□□□ 0.7
SSX3Q99909 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SSX3Q99909 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.39■□□□□ 0.7
SSX3Q99909 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SSX3Q99909 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SSX3Q99909 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 KRT18P10-201ENST00000388836 1287 ntBASIC19.39■□□□□ 0.69
SSX3Q99909 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.39■□□□□ 0.69
SSX3Q99909 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
SSX3Q99909 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.39■□□□□ 0.69
SSX3Q99909 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.39■□□□□ 0.69
SSX3Q99909 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX3Q99909 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
SSX3Q99909 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX3Q99909 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 KRT8P33-201ENST00000508125 1423 ntBASIC19.38■□□□□ 0.69
SSX3Q99909 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX3Q99909 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX3Q99909 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.38■□□□□ 0.69
SSX3Q99909 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX3Q99909 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.37■□□□□ 0.69
SSX3Q99909 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 RPS2P7-201ENST00000447334 885 ntBASIC19.37■□□□□ 0.69
SSX3Q99909 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.37■□□□□ 0.69
SSX3Q99909 AC087393.1-201ENST00000582896 145 ntBASIC19.37■□□□□ 0.69
SSX3Q99909 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX3Q99909 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX3Q99909 CLDN5-201ENST00000403084 2357 ntBASIC19.36■□□□□ 0.69
SSX3Q99909 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms