Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CNTNAP3BQ96NU0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.58■■□□□ 1.21
CNTNAP3BQ96NU0 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 MIR4767-201ENST00000582827 78 ntBASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CNTNAP3BQ96NU0 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CNTNAP3BQ96NU0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.56■■□□□ 1.2
CNTNAP3BQ96NU0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CNTNAP3BQ96NU0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.55■■□□□ 1.2
CNTNAP3BQ96NU0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CNTNAP3BQ96NU0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CNTNAP3BQ96NU0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.55■■□□□ 1.2
CNTNAP3BQ96NU0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CNTNAP3BQ96NU0 AC027682.1-201ENST00000562846 899 ntBASIC22.54■■□□□ 1.2
CNTNAP3BQ96NU0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CNTNAP3BQ96NU0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CNTNAP3BQ96NU0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CNTNAP3BQ96NU0 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CNTNAP3BQ96NU0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.53■■□□□ 1.2
CNTNAP3BQ96NU0 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.53■■□□□ 1.2
CNTNAP3BQ96NU0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 AC100797.4-201ENST00000631653 1827 ntBASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CNTNAP3BQ96NU0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L19-201ENST00000557448 1267 ntBASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CNTNAP3BQ96NU0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.5■■□□□ 1.19
CNTNAP3BQ96NU0 AL135925.1-201ENST00000605920 1701 ntBASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 AC008764.7-201ENST00000593779 1081 ntBASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 AL031602.1-201ENST00000633169 911 ntBASIC22.49■■□□□ 1.19
CNTNAP3BQ96NU0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CNTNAP3BQ96NU0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L2-201ENST00000561772 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L6-201ENST00000626483 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L1-201ENST00000627662 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L8-201ENST00000629013 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L3-201ENST00000630187 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L7-201ENST00000630678 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DUX4L5-201ENST00000630834 1275 ntBASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CNTNAP3BQ96NU0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CNTNAP3BQ96NU0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.45■■□□□ 1.18
CNTNAP3BQ96NU0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CNTNAP3BQ96NU0 AP002414.2-202ENST00000590929 1450 ntBASIC22.45■■□□□ 1.18
CNTNAP3BQ96NU0 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CNTNAP3BQ96NU0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CNTNAP3BQ96NU0 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.44■■□□□ 1.18
CNTNAP3BQ96NU0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.44■■□□□ 1.18
CNTNAP3BQ96NU0 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.44■■□□□ 1.18
CNTNAP3BQ96NU0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms