Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 EIF1-207ENST00000591776 797 ntTSL 4 BASIC7.8□□□□□ -1.167e-8■□□□□ 9.7
DDX42Q86XP3 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.237e-8■□□□□ 9.7
DDX42Q86XP3 EIF1-205ENST00000482111 1428 ntTSL 26.25□□□□□ -1.417e-8■□□□□ 9.7
DDX42Q86XP3 ACTB-203ENST00000417101 472 ntTSL 423.12■■□□□ 1.293e-24■□□□□ 9.6
DDX42Q86XP3 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.26■■■□□ 2.599e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.91■■■□□ 2.389e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.11■■□□□ 1.939e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.849e-6■□□□□ 9.6
DDX42Q86XP3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.92■■□□□ 1.749e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC25.08■■□□□ 1.619e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.58■■□□□ 1.379e-6■□□□□ 9.6
DDX42Q86XP3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.359e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.16■■□□□ 1.39e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-204ENST00000411612 872 ntTSL 523.06■■□□□ 1.289e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-216ENST00000637419 2683 ntTSL 522■■□□□ 1.119e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-214ENST00000567414 735 ntTSL 221.34■■□□□ 1.019e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.71■□□□□ 0.919e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-207ENST00000561750 675 ntTSL 220.7■□□□□ 0.99e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-208ENST00000588410 563 ntTSL 420.69■□□□□ 0.99e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-205ENST00000476983 1885 ntTSL 1 (best)20.45■□□□□ 0.869e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-204ENST00000586499 708 ntTSL 420.06■□□□□ 0.89e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.69■□□□□ 0.749e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.749e-6■□□□□ 9.6
DDX42Q86XP3 NOC2L-204ENST00000483767 1611 ntTSL 219.39■□□□□ 0.699e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-206ENST00000587201 877 ntTSL 218.71■□□□□ 0.599e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.55■□□□□ 0.569e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.55■□□□□ 0.569e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.569e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.32■□□□□ 0.529e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-208ENST00000562141 650 ntTSL 518.14■□□□□ 0.499e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.359e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.96■□□□□ 0.319e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.7■□□□□ 0.269e-6■□□□□ 9.6
DDX42Q86XP3 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.189e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.179e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-202ENST00000446534 1341 ntTSL 216.12■□□□□ 0.179e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-219ENST00000498023 626 ntTSL 215.64■□□□□ 0.099e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-206ENST00000478402 3149 ntTSL 215.57■□□□□ 0.089e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-205ENST00000586833 558 ntTSL 514.89□□□□□ -0.039e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.039e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-206ENST00000484699 585 ntTSL 214.72□□□□□ -0.059e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-205ENST00000472798 422 ntTSL 214.53□□□□□ -0.089e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.099e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.26□□□□□ -0.139e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC14.08□□□□□ -0.159e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.169e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.29e-6■□□□□ 9.6
DDX42Q86XP3 HAGHL-209ENST00000562187 100 ntTSL 313.78□□□□□ -0.29e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-211ENST00000471162 3565 ntTSL 1 (best)13.67□□□□□ -0.229e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-204ENST00000420783 3656 ntTSL 1 (best)13.37□□□□□ -0.279e-6■□□□□ 9.6
DDX42Q86XP3 GSE1-215ENST00000635906 666 ntTSL 312.7□□□□□ -0.389e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-207ENST00000448293 3377 ntTSL 2 BASIC12.64□□□□□ -0.399e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-208ENST00000452875 3916 ntTSL 1 (best)12.49□□□□□ -0.419e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC12.46□□□□□ -0.429e-6■□□□□ 9.6
DDX42Q86XP3 NOC2L-203ENST00000477976 4201 ntTSL 512.39□□□□□ -0.439e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-207ENST00000497188 2702 ntTSL 212.02□□□□□ -0.499e-6■□□□□ 9.6
DDX42Q86XP3 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.499e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-210ENST00000496123 693 ntTSL 511.08□□□□□ -0.649e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC10.42□□□□□ -0.749e-6■□□□□ 9.6
DDX42Q86XP3 PYCR2-207ENST00000489681 597 ntTSL 310.18□□□□□ -0.789e-6■□□□□ 9.6
DDX42Q86XP3 CLK2-204ENST00000471047 701 ntTSL 310.1□□□□□ -0.799e-6■□□□□ 9.6
DDX42Q86XP3 TPM4-210ENST00000588507 367 ntTSL 37.39□□□□□ -1.239e-6■□□□□ 9.6
DDX42Q86XP3 FADS1-213ENST00000539999 405 ntTSL 35.89□□□□□ -1.479e-6■□□□□ 9.6
DDX42Q86XP3 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC15.39■□□□□ 0.053e-10■□□□□ 9.6
DDX42Q86XP3 H3F3B-203ENST00000586518 1701 nt31.39■■■□□ 2.624e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-202ENST00000586270 468 ntTSL 226.08■■□□□ 1.774e-9■□□□□ 9.6
DDX42Q86XP3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.58■□□□□ 0.734e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-209ENST00000589949 842 ntTSL 219.05■□□□□ 0.644e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-207ENST00000589417 575 ntTSL 218.52■□□□□ 0.564e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.454e-9■□□□□ 9.6
DDX42Q86XP3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.37■□□□□ 0.374e-9■□□□□ 9.6
DDX42Q86XP3 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.134e-9■□□□□ 9.6
DDX42Q86XP3 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.034e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.044e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-205ENST00000587171 586 ntTSL 213.95□□□□□ -0.184e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-213ENST00000593254 894 ntTSL 513.95□□□□□ -0.184e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-212ENST00000592643 795 ntTSL 3 BASIC12.38□□□□□ -0.434e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-210ENST00000591890 783 ntTSL 3 BASIC11.36□□□□□ -0.594e-9■□□□□ 9.6
DDX42Q86XP3 KDELR2-205ENST00000463747 376 ntTSL 511.27□□□□□ -0.614e-9■□□□□ 9.6
DDX42Q86XP3 KDELR2-202ENST00000382267 583 ntTSL 410.37□□□□□ -0.754e-9■□□□□ 9.6
DDX42Q86XP3 H3F3B-204ENST00000586607 551 ntAPPRIS P1 TSL 4 BASIC10.31□□□□□ -0.764e-9■□□□□ 9.6
DDX42Q86XP3 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC8.58□□□□□ -1.044e-9■□□□□ 9.6
DDX42Q86XP3 KDELR2-204ENST00000462052 382 ntTSL 28.44□□□□□ -1.064e-9■□□□□ 9.6
DDX42Q86XP3 SFPQ-202ENST00000460428 464 ntTSL 28.43□□□□□ -1.062e-17■□□□□ 9.6
DDX42Q86XP3 SFPQ-206ENST00000470472 874 ntTSL 54.4□□□□□ -1.712e-17■□□□□ 9.6
DDX42Q86XP3 DNM2-215ENST00000590806 5651 ntTSL 215.54■□□□□ 0.082e-10■□□□□ 9.5
DDX42Q86XP3 DNM2-214ENST00000590787 4299 ntTSL 212.78□□□□□ -0.362e-10■□□□□ 9.5
DDX42Q86XP3 FTH1-204ENST00000529548 567 ntTSL 310.69□□□□□ -0.72e-10■□□□□ 9.5
DDX42Q86XP3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.851e-8■□□□□ 9.5
DDX42Q86XP3 ACTB-213ENST00000493945 1236 ntTSL 515.63■□□□□ 0.098e-24■□□□□ 9.5
DDX42Q86XP3 SRSF2-201ENST00000358156 572 ntTSL 419.91■□□□□ 0.783e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.773e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-207ENST00000583836 561 ntTSL 518.39■□□□□ 0.533e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.03■□□□□ 0.483e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-204ENST00000452355 1357 ntTSL 516.83■□□□□ 0.283e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.173e-7■□□□□ 9.3
DDX42Q86XP3 SRSF2-208ENST00000585202 1359 ntTSL 315.53■□□□□ 0.083e-7■□□□□ 9.3
DDX42Q86XP3 SRSF7-203ENST00000415527 1135 ntTSL 515.44■□□□□ 0.062e-6■□□□□ 9.3
DDX42Q86XP3 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.512e-6■□□□□ 9.3
DDX42Q86XP3 SRSF7-206ENST00000431066 1847 ntTSL 511.39□□□□□ -0.592e-6■□□□□ 9.3
Retrieved 100 of 2,477 protein–RNA pairs in 124.7 ms