Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSPG4Q6UVK1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CSPG4Q6UVK1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CSPG4Q6UVK1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CSPG4Q6UVK1 AC105265.2-201ENST00000467189 838 ntBASIC19.52■□□□□ 0.71
CSPG4Q6UVK1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CSPG4Q6UVK1 UNC93B3-201ENST00000308076 687 ntBASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 AC097381.1-201ENST00000429019 1296 ntBASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 MIR6821-201ENST00000617625 74 ntBASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 AC090192.1-201ENST00000517740 490 ntBASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.51■□□□□ 0.71
CSPG4Q6UVK1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.5■□□□□ 0.71
CSPG4Q6UVK1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CSPG4Q6UVK1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CSPG4Q6UVK1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.47■□□□□ 0.71
CSPG4Q6UVK1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.46■□□□□ 0.71
CSPG4Q6UVK1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 AP001330.3-201ENST00000520123 633 ntBASIC19.45■□□□□ 0.7
CSPG4Q6UVK1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CSPG4Q6UVK1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 MIR939-201ENST00000401314 82 ntBASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 AL136162.1-201ENST00000607711 1078 ntBASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSPG4Q6UVK1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 AL136967.2-201ENST00000623968 743 ntBASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 SNX5-217ENST00000606557 1087 ntBASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CSPG4Q6UVK1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CSPG4Q6UVK1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms