Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.81■■■□□ 2.52
NCBP3Q53F19 AC090877.2-201ENST00000558441 1738 ntBASIC30.81■■■□□ 2.52
NCBP3Q53F19 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
NCBP3Q53F19 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.8■■■□□ 2.52
NCBP3Q53F19 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
NCBP3Q53F19 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NCBP3Q53F19 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
NCBP3Q53F19 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.8■■■□□ 2.52
NCBP3Q53F19 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NCBP3Q53F19 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NCBP3Q53F19 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.8■■■□□ 2.52
NCBP3Q53F19 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
NCBP3Q53F19 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.79■■■□□ 2.52
NCBP3Q53F19 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
NCBP3Q53F19 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
NCBP3Q53F19 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.78■■■□□ 2.52
NCBP3Q53F19 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC30.78■■■□□ 2.52
NCBP3Q53F19 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NCBP3Q53F19 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.78■■■□□ 2.52
NCBP3Q53F19 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
NCBP3Q53F19 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NCBP3Q53F19 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.78■■■□□ 2.52
NCBP3Q53F19 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.77■■■□□ 2.52
NCBP3Q53F19 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NCBP3Q53F19 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.76■■■□□ 2.51
NCBP3Q53F19 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.76■■■□□ 2.51
NCBP3Q53F19 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.76■■■□□ 2.51
NCBP3Q53F19 AC010980.1-201ENST00000587192 1142 ntBASIC30.76■■■□□ 2.51
NCBP3Q53F19 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
NCBP3Q53F19 BHLHE23-202ENST00000612929 1109 ntBASIC30.76■■■□□ 2.51
NCBP3Q53F19 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
NCBP3Q53F19 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.76■■■□□ 2.51
NCBP3Q53F19 KRT18P24-201ENST00000344739 1156 ntBASIC30.75■■■□□ 2.51
NCBP3Q53F19 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.75■■■□□ 2.51
NCBP3Q53F19 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
NCBP3Q53F19 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NCBP3Q53F19 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NCBP3Q53F19 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
NCBP3Q53F19 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
NCBP3Q53F19 AC103834.1-201ENST00000520383 144 ntBASIC30.74■■■□□ 2.51
NCBP3Q53F19 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
NCBP3Q53F19 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NCBP3Q53F19 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NCBP3Q53F19 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.73■■■□□ 2.51
NCBP3Q53F19 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NCBP3Q53F19 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NCBP3Q53F19 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.73■■■□□ 2.51
NCBP3Q53F19 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.73■■■□□ 2.51
NCBP3Q53F19 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NCBP3Q53F19 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NCBP3Q53F19 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
NCBP3Q53F19 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NCBP3Q53F19 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.72■■■□□ 2.51
NCBP3Q53F19 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
NCBP3Q53F19 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NCBP3Q53F19 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC30.71■■■□□ 2.51
NCBP3Q53F19 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
NCBP3Q53F19 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.71■■■□□ 2.51
NCBP3Q53F19 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC30.71■■■□□ 2.51
NCBP3Q53F19 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NCBP3Q53F19 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.7■■■□□ 2.51
NCBP3Q53F19 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
NCBP3Q53F19 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
NCBP3Q53F19 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
NCBP3Q53F19 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
NCBP3Q53F19 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NCBP3Q53F19 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
NCBP3Q53F19 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NCBP3Q53F19 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NCBP3Q53F19 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
NCBP3Q53F19 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NCBP3Q53F19 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC30.69■■■□□ 2.5
NCBP3Q53F19 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NCBP3Q53F19 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC30.69■■■□□ 2.5
NCBP3Q53F19 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
NCBP3Q53F19 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
NCBP3Q53F19 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NCBP3Q53F19 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.68■■■□□ 2.5
NCBP3Q53F19 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.68■■■□□ 2.5
NCBP3Q53F19 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.68■■■□□ 2.5
NCBP3Q53F19 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.68■■■□□ 2.5
NCBP3Q53F19 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.67■■■□□ 2.5
NCBP3Q53F19 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.67■■■□□ 2.5
NCBP3Q53F19 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
NCBP3Q53F19 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.67■■■□□ 2.5
NCBP3Q53F19 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.66■■■□□ 2.5
NCBP3Q53F19 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NCBP3Q53F19 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
NCBP3Q53F19 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.66■■■□□ 2.5
NCBP3Q53F19 AL139125.2-201ENST00000623134 1869 ntBASIC30.66■■■□□ 2.5
NCBP3Q53F19 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.66■■■□□ 2.5
NCBP3Q53F19 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NCBP3Q53F19 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NCBP3Q53F19 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NCBP3Q53F19 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms