Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 AL031432.3-201ENST00000607698 485 ntBASIC22.54■■□□□ 1.2
COL28A1Q2UY09 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL28A1Q2UY09 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.52■■□□□ 1.2
COL28A1Q2UY09 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
COL28A1Q2UY09 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.52■■□□□ 1.2
COL28A1Q2UY09 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL28A1Q2UY09 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL28A1Q2UY09 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.51■■□□□ 1.19
COL28A1Q2UY09 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL28A1Q2UY09 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 MIR6821-201ENST00000617625 74 ntBASIC22.5■■□□□ 1.19
COL28A1Q2UY09 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL28A1Q2UY09 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 AL162430.1-201ENST00000480705 870 ntBASIC22.49■■□□□ 1.19
COL28A1Q2UY09 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.49■■□□□ 1.19
COL28A1Q2UY09 AP004609.3-201ENST00000610705 1884 ntBASIC22.49■■□□□ 1.19
COL28A1Q2UY09 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 UNC93B3-201ENST00000308076 687 ntBASIC22.48■■□□□ 1.19
COL28A1Q2UY09 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 AC105265.2-201ENST00000467189 838 ntBASIC22.48■■□□□ 1.19
COL28A1Q2UY09 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.48■■□□□ 1.19
COL28A1Q2UY09 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.48■■□□□ 1.19
COL28A1Q2UY09 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.47■■□□□ 1.19
COL28A1Q2UY09 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 AL136162.1-201ENST00000607711 1078 ntBASIC22.46■■□□□ 1.19
COL28A1Q2UY09 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.46■■□□□ 1.19
COL28A1Q2UY09 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.19
COL28A1Q2UY09 AC142472.1-201ENST00000612013 1741 ntBASIC22.45■■□□□ 1.19
COL28A1Q2UY09 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL28A1Q2UY09 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 AC090192.1-201ENST00000517740 490 ntBASIC22.45■■□□□ 1.18
COL28A1Q2UY09 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 MIR4281-201ENST00000580852 62 ntBASIC22.45■■□□□ 1.18
COL28A1Q2UY09 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL28A1Q2UY09 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
COL28A1Q2UY09 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL28A1Q2UY09 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.44■■□□□ 1.18
COL28A1Q2UY09 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.44■■□□□ 1.18
COL28A1Q2UY09 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.44■■□□□ 1.18
COL28A1Q2UY09 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL28A1Q2UY09 AC097381.1-201ENST00000429019 1296 ntBASIC22.43■■□□□ 1.18
COL28A1Q2UY09 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL28A1Q2UY09 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL28A1Q2UY09 KRT18P10-201ENST00000388836 1287 ntBASIC22.42■■□□□ 1.18
COL28A1Q2UY09 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL28A1Q2UY09 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL28A1Q2UY09 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL28A1Q2UY09 AC087623.3-201ENST00000607047 1098 ntBASIC22.42■■□□□ 1.18
COL28A1Q2UY09 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.41■■□□□ 1.18
COL28A1Q2UY09 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL28A1Q2UY09 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
COL28A1Q2UY09 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL28A1Q2UY09 AL355001.2-201ENST00000620617 1191 ntBASIC22.41■■□□□ 1.18
COL28A1Q2UY09 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.41■■□□□ 1.18
COL28A1Q2UY09 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL28A1Q2UY09 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms