Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC33.11■■■□□ 2.89
MSH6P52701 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC33.11■■■□□ 2.89
MSH6P52701 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
MSH6P52701 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC33.1■■■□□ 2.89
MSH6P52701 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC33.1■■■□□ 2.89
MSH6P52701 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
MSH6P52701 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC33.09■■■□□ 2.89
MSH6P52701 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
MSH6P52701 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
MSH6P52701 AC090192.1-201ENST00000517740 490 ntBASIC33.09■■■□□ 2.89
MSH6P52701 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
MSH6P52701 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
MSH6P52701 GATM-206ENST00000558336 1522 ntTSL 2 BASIC33.07■■■□□ 2.88
MSH6P52701 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
MSH6P52701 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
MSH6P52701 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC33.06■■■□□ 2.88
MSH6P52701 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
MSH6P52701 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
MSH6P52701 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
MSH6P52701 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
MSH6P52701 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC33.05■■■□□ 2.88
MSH6P52701 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
MSH6P52701 RARRES2P11-201ENST00000635158 484 ntBASIC33.05■■■□□ 2.88
MSH6P52701 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC33.04■■■□□ 2.88
MSH6P52701 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
MSH6P52701 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC33.04■■■□□ 2.88
MSH6P52701 SF1-220ENST00000626028 704 ntTSL 2 BASIC33.04■■■□□ 2.88
MSH6P52701 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC33.03■■■□□ 2.88
MSH6P52701 DUX4L19-201ENST00000557448 1267 ntBASIC33.03■■■□□ 2.88
MSH6P52701 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
MSH6P52701 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
MSH6P52701 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
MSH6P52701 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC33.02■■■□□ 2.88
MSH6P52701 AC004448.1-201ENST00000458332 883 ntBASIC33.02■■■□□ 2.88
MSH6P52701 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC33.02■■■□□ 2.88
MSH6P52701 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
MSH6P52701 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
MSH6P52701 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC33.01■■■□□ 2.88
MSH6P52701 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC33.01■■■□□ 2.88
MSH6P52701 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC33.01■■■□□ 2.88
MSH6P52701 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
MSH6P52701 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC33■■■□□ 2.87
MSH6P52701 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC33■■■□□ 2.87
MSH6P52701 CA15P2-201ENST00000611168 834 ntBASIC33■■■□□ 2.87
MSH6P52701 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
MSH6P52701 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC33■■■□□ 2.87
MSH6P52701 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
MSH6P52701 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
MSH6P52701 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
MSH6P52701 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
MSH6P52701 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC32.98■■■□□ 2.87
MSH6P52701 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
MSH6P52701 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
MSH6P52701 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
MSH6P52701 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
MSH6P52701 MIR4767-201ENST00000582827 78 ntBASIC32.97■■■□□ 2.87
MSH6P52701 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC32.97■■■□□ 2.87
MSH6P52701 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
MSH6P52701 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.97■■■□□ 2.87
MSH6P52701 RASA4CP-201ENST00000424092 1398 ntBASIC32.97■■■□□ 2.87
MSH6P52701 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
MSH6P52701 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
MSH6P52701 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC32.96■■■□□ 2.87
MSH6P52701 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
MSH6P52701 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC32.96■■■□□ 2.87
MSH6P52701 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC32.96■■■□□ 2.87
MSH6P52701 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC32.96■■■□□ 2.87
MSH6P52701 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.96■■■□□ 2.87
MSH6P52701 AC142472.1-201ENST00000612013 1741 ntBASIC32.96■■■□□ 2.87
MSH6P52701 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
MSH6P52701 MAG-206ENST00000597035 542 ntTSL 4 BASIC32.96■■■□□ 2.87
MSH6P52701 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.95■■■□□ 2.87
MSH6P52701 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC32.95■■■□□ 2.86
MSH6P52701 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC32.95■■■□□ 2.86
MSH6P52701 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
MSH6P52701 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
MSH6P52701 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC32.94■■■□□ 2.86
MSH6P52701 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC32.93■■■□□ 2.86
MSH6P52701 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC32.92■■■□□ 2.86
MSH6P52701 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
MSH6P52701 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
MSH6P52701 AC027682.1-201ENST00000562846 899 ntBASIC32.92■■■□□ 2.86
MSH6P52701 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC32.92■■■□□ 2.86
MSH6P52701 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC32.92■■■□□ 2.86
MSH6P52701 SNAI3-AS1-204ENST00000567997 2048 ntBASIC32.91■■■□□ 2.86
MSH6P52701 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
MSH6P52701 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC32.91■■■□□ 2.86
MSH6P52701 PTMA-205ENST00000410064 814 ntTSL 2 BASIC32.91■■■□□ 2.86
MSH6P52701 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
MSH6P52701 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
MSH6P52701 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC32.9■■■□□ 2.86
MSH6P52701 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
MSH6P52701 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.89■■■□□ 2.86
MSH6P52701 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
MSH6P52701 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
MSH6P52701 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC32.89■■■□□ 2.86
MSH6P52701 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC32.89■■■□□ 2.86
MSH6P52701 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC32.88■■■□□ 2.85
MSH6P52701 SYT6-210ENST00000641643 1587 ntBASIC32.88■■■□□ 2.85
MSH6P52701 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms