Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.84■□□□□ 0.93
TIMP3P35625 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.84■□□□□ 0.93
TIMP3P35625 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.84■□□□□ 0.93
TIMP3P35625 MIR6724-1-201ENST00000616420 92 ntBASIC20.84■□□□□ 0.93
TIMP3P35625 MIR6724-2-201ENST00000616483 92 ntBASIC20.84■□□□□ 0.93
TIMP3P35625 MIR6724-4-201ENST00000617390 92 ntBASIC20.84■□□□□ 0.93
TIMP3P35625 MIR6724-3-201ENST00000622482 92 ntBASIC20.84■□□□□ 0.93
TIMP3P35625 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP3P35625 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.84■□□□□ 0.93
TIMP3P35625 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP3P35625 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TIMP3P35625 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TIMP3P35625 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.83■□□□□ 0.93
TIMP3P35625 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.83■□□□□ 0.93
TIMP3P35625 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.83■□□□□ 0.93
TIMP3P35625 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.83■□□□□ 0.93
TIMP3P35625 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TIMP3P35625 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TIMP3P35625 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.82■□□□□ 0.92
TIMP3P35625 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.82■□□□□ 0.92
TIMP3P35625 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.82■□□□□ 0.92
TIMP3P35625 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.82■□□□□ 0.92
TIMP3P35625 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP3P35625 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TIMP3P35625 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
TIMP3P35625 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.81■□□□□ 0.92
TIMP3P35625 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.81■□□□□ 0.92
TIMP3P35625 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP3P35625 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.8■□□□□ 0.92
TIMP3P35625 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP3P35625 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP3P35625 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TIMP3P35625 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP3P35625 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP3P35625 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP3P35625 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.8■□□□□ 0.92
TIMP3P35625 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
TIMP3P35625 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP3P35625 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP3P35625 AC092803.2-201ENST00000564287 1899 ntBASIC20.79■□□□□ 0.92
TIMP3P35625 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
TIMP3P35625 AL121749.1-202ENST00000609313 2153 ntBASIC20.79■□□□□ 0.92
TIMP3P35625 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP3P35625 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.79■□□□□ 0.92
TIMP3P35625 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.79■□□□□ 0.92
TIMP3P35625 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.79■□□□□ 0.92
TIMP3P35625 MIR3621-201ENST00000580529 85 ntBASIC20.79■□□□□ 0.92
TIMP3P35625 AL117332.1-201ENST00000622628 974 ntBASIC20.79■□□□□ 0.92
TIMP3P35625 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP3P35625 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP3P35625 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP3P35625 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TIMP3P35625 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.78■□□□□ 0.92
TIMP3P35625 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TIMP3P35625 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TIMP3P35625 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TIMP3P35625 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TIMP3P35625 AC019069.1-201ENST00000610008 1333 ntBASIC20.78■□□□□ 0.92
TIMP3P35625 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP3P35625 AL356740.2-201ENST00000601559 647 ntBASIC20.77■□□□□ 0.92
TIMP3P35625 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TIMP3P35625 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP3P35625 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP3P35625 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP3P35625 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
TIMP3P35625 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TIMP3P35625 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TIMP3P35625 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.76■□□□□ 0.91
TIMP3P35625 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.76■□□□□ 0.91
TIMP3P35625 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.76■□□□□ 0.91
TIMP3P35625 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP3P35625 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TIMP3P35625 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.75■□□□□ 0.91
TIMP3P35625 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TIMP3P35625 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP3P35625 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP3P35625 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP3P35625 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP3P35625 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.74■□□□□ 0.91
TIMP3P35625 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.74■□□□□ 0.91
TIMP3P35625 AC131281.2-201ENST00000520478 145 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms