Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 AP002414.2-202ENST00000590929 1450 ntBASIC19.37■□□□□ 0.69
ATF4P18848 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC19.37■□□□□ 0.69
ATF4P18848 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.37■□□□□ 0.69
ATF4P18848 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.37■□□□□ 0.69
ATF4P18848 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.37■□□□□ 0.69
ATF4P18848 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ATF4P18848 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
ATF4P18848 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATF4P18848 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.36■□□□□ 0.69
ATF4P18848 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.36■□□□□ 0.69
ATF4P18848 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.36■□□□□ 0.69
ATF4P18848 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF4P18848 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF4P18848 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATF4P18848 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATF4P18848 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
ATF4P18848 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATF4P18848 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF4P18848 EI24-212ENST00000615917 1407 ntTSL 2 BASIC19.34■□□□□ 0.69
ATF4P18848 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.34■□□□□ 0.69
ATF4P18848 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ATF4P18848 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.34■□□□□ 0.69
ATF4P18848 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF4P18848 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF4P18848 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF4P18848 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
ATF4P18848 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATF4P18848 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
ATF4P18848 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
ATF4P18848 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATF4P18848 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ATF4P18848 AC092667.1-201ENST00000434301 2586 ntBASIC19.33■□□□□ 0.69
ATF4P18848 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATF4P18848 MIR7108-201ENST00000614319 87 ntBASIC19.33■□□□□ 0.68
ATF4P18848 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
ATF4P18848 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.33■□□□□ 0.68
ATF4P18848 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATF4P18848 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATF4P18848 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.32■□□□□ 0.68
ATF4P18848 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.32■□□□□ 0.68
ATF4P18848 EP400NL-214ENST00000641289 2402 ntBASIC19.32■□□□□ 0.68
ATF4P18848 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.32■□□□□ 0.68
ATF4P18848 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
ATF4P18848 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.32■□□□□ 0.68
ATF4P18848 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.32■□□□□ 0.68
ATF4P18848 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ATF4P18848 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATF4P18848 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.32■□□□□ 0.68
ATF4P18848 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATF4P18848 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATF4P18848 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATF4P18848 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
ATF4P18848 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ATF4P18848 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATF4P18848 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.31■□□□□ 0.68
ATF4P18848 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.31■□□□□ 0.68
ATF4P18848 AC097639.1-201ENST00000565519 1891 ntBASIC19.31■□□□□ 0.68
ATF4P18848 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
ATF4P18848 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 AL391422.3-201ENST00000603791 2761 ntBASIC19.3■□□□□ 0.68
ATF4P18848 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATF4P18848 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 AC135983.2-203ENST00000454486 1613 ntBASIC19.29■□□□□ 0.68
ATF4P18848 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.29■□□□□ 0.68
ATF4P18848 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.29■□□□□ 0.68
ATF4P18848 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.29■□□□□ 0.68
ATF4P18848 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.29■□□□□ 0.68
ATF4P18848 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.29■□□□□ 0.68
ATF4P18848 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ATF4P18848 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATF4P18848 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.28■□□□□ 0.68
ATF4P18848 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms