Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.02■■□□□ 1.44
PDGFBP01127 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.02■■□□□ 1.44
PDGFBP01127 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
PDGFBP01127 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PDGFBP01127 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PDGFBP01127 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC24.01■■□□□ 1.43
PDGFBP01127 CA15P2-201ENST00000611168 834 ntBASIC24.01■■□□□ 1.43
PDGFBP01127 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PDGFBP01127 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PDGFBP01127 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PDGFBP01127 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
PDGFBP01127 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24■■□□□ 1.43
PDGFBP01127 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24■■□□□ 1.43
PDGFBP01127 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24■■□□□ 1.43
PDGFBP01127 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PDGFBP01127 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.99■■□□□ 1.43
PDGFBP01127 MIR4767-201ENST00000582827 78 ntBASIC23.99■■□□□ 1.43
PDGFBP01127 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.99■■□□□ 1.43
PDGFBP01127 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.99■■□□□ 1.43
PDGFBP01127 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PDGFBP01127 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.99■■□□□ 1.43
PDGFBP01127 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PDGFBP01127 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PDGFBP01127 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.98■■□□□ 1.43
PDGFBP01127 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PDGFBP01127 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.98■■□□□ 1.43
PDGFBP01127 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PDGFBP01127 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PDGFBP01127 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PDGFBP01127 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PDGFBP01127 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PDGFBP01127 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PDGFBP01127 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.97■■□□□ 1.43
PDGFBP01127 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.96■■□□□ 1.43
PDGFBP01127 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PDGFBP01127 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
PDGFBP01127 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PDGFBP01127 AC004448.1-201ENST00000458332 883 ntBASIC23.96■■□□□ 1.43
PDGFBP01127 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.96■■□□□ 1.43
PDGFBP01127 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
PDGFBP01127 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PDGFBP01127 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PDGFBP01127 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PDGFBP01127 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PDGFBP01127 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
PDGFBP01127 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.95■■□□□ 1.42
PDGFBP01127 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.95■■□□□ 1.42
PDGFBP01127 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PDGFBP01127 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PDGFBP01127 RASA4CP-201ENST00000424092 1398 ntBASIC23.94■■□□□ 1.42
PDGFBP01127 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PDGFBP01127 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.94■■□□□ 1.42
PDGFBP01127 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PDGFBP01127 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.94■■□□□ 1.42
PDGFBP01127 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
PDGFBP01127 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
PDGFBP01127 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PDGFBP01127 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PDGFBP01127 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PDGFBP01127 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.93■■□□□ 1.42
PDGFBP01127 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PDGFBP01127 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PDGFBP01127 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PDGFBP01127 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.92■■□□□ 1.42
PDGFBP01127 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.92■■□□□ 1.42
PDGFBP01127 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.92■■□□□ 1.42
PDGFBP01127 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.92■■□□□ 1.42
PDGFBP01127 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PDGFBP01127 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PDGFBP01127 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
PDGFBP01127 IRS3P-201ENST00000223076 1006 ntBASIC23.91■■□□□ 1.42
PDGFBP01127 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.91■■□□□ 1.42
PDGFBP01127 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.91■■□□□ 1.42
PDGFBP01127 DUX4L19-201ENST00000557448 1267 ntBASIC23.91■■□□□ 1.42
PDGFBP01127 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.91■■□□□ 1.42
PDGFBP01127 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.91■■□□□ 1.42
PDGFBP01127 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PDGFBP01127 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.91■■□□□ 1.42
PDGFBP01127 SYT6-210ENST00000641643 1587 ntBASIC23.91■■□□□ 1.42
PDGFBP01127 AC022517.1-201ENST00000592429 346 ntBASIC23.9■■□□□ 1.42
PDGFBP01127 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.9■■□□□ 1.42
PDGFBP01127 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.89■■□□□ 1.42
PDGFBP01127 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PDGFBP01127 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
PDGFBP01127 AC142472.1-201ENST00000612013 1741 ntBASIC23.89■■□□□ 1.41
PDGFBP01127 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.41
PDGFBP01127 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
PDGFBP01127 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
PDGFBP01127 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.88■■□□□ 1.41
PDGFBP01127 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PDGFBP01127 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PDGFBP01127 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PDGFBP01127 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PDGFBP01127 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PDGFBP01127 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.87■■□□□ 1.41
PDGFBP01127 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.87■■□□□ 1.41
PDGFBP01127 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.87■■□□□ 1.41
PDGFBP01127 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.87■■□□□ 1.41
PDGFBP01127 AC008764.7-201ENST00000593779 1081 ntBASIC23.87■■□□□ 1.41
PDGFBP01127 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms