Protein–RNA interactions for Protein: O75841

UPK1B, Uroplakin-1b, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1BO75841 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.53■□□□□ 0.88
UPK1BO75841 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
UPK1BO75841 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UPK1BO75841 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
UPK1BO75841 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.52■□□□□ 0.88
UPK1BO75841 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.52■□□□□ 0.88
UPK1BO75841 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.52■□□□□ 0.88
UPK1BO75841 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.52■□□□□ 0.88
UPK1BO75841 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPK1BO75841 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPK1BO75841 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.51■□□□□ 0.87
UPK1BO75841 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPK1BO75841 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UPK1BO75841 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
UPK1BO75841 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.5■□□□□ 0.87
UPK1BO75841 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
UPK1BO75841 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.5■□□□□ 0.87
UPK1BO75841 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
UPK1BO75841 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.5■□□□□ 0.87
UPK1BO75841 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UPK1BO75841 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
UPK1BO75841 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
UPK1BO75841 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
UPK1BO75841 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
UPK1BO75841 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UPK1BO75841 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
UPK1BO75841 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UPK1BO75841 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
UPK1BO75841 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
UPK1BO75841 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC20.48■□□□□ 0.87
UPK1BO75841 FOXO3B-201ENST00000395675 1928 ntBASIC20.48■□□□□ 0.87
UPK1BO75841 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UPK1BO75841 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UPK1BO75841 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
UPK1BO75841 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.47■□□□□ 0.87
UPK1BO75841 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UPK1BO75841 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
UPK1BO75841 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
UPK1BO75841 GUSBP5-202ENST00000510805 1989 ntBASIC20.46■□□□□ 0.87
UPK1BO75841 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
UPK1BO75841 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.46■□□□□ 0.87
UPK1BO75841 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.46■□□□□ 0.87
UPK1BO75841 DUSP8P3-201ENST00000399571 1760 ntBASIC20.46■□□□□ 0.87
UPK1BO75841 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UPK1BO75841 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
UPK1BO75841 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.45■□□□□ 0.86
UPK1BO75841 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.45■□□□□ 0.86
UPK1BO75841 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.45■□□□□ 0.86
UPK1BO75841 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
UPK1BO75841 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
UPK1BO75841 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.44■□□□□ 0.86
UPK1BO75841 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 ECEL1P1-201ENST00000373592 1742 ntBASIC20.44■□□□□ 0.86
UPK1BO75841 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
UPK1BO75841 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
UPK1BO75841 LINC00273-201ENST00000539813 1452 ntBASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms