Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM13O60858 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TRIM13O60858 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM13O60858 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
TRIM13O60858 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM13O60858 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM13O60858 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TRIM13O60858 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TRIM13O60858 AC012676.1-201ENST00000574705 1949 ntBASIC23.08■■□□□ 1.28
TRIM13O60858 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TRIM13O60858 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TRIM13O60858 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
TRIM13O60858 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.06■■□□□ 1.28
TRIM13O60858 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.06■■□□□ 1.28
TRIM13O60858 AC092296.2-201ENST00000589470 999 ntBASIC23.06■■□□□ 1.28
TRIM13O60858 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
TRIM13O60858 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TRIM13O60858 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.05■■□□□ 1.28
TRIM13O60858 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
TRIM13O60858 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.05■■□□□ 1.28
TRIM13O60858 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM13O60858 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM13O60858 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM13O60858 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM13O60858 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.04■■□□□ 1.28
TRIM13O60858 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TRIM13O60858 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
TRIM13O60858 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
TRIM13O60858 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
TRIM13O60858 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.03■■□□□ 1.28
TRIM13O60858 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM13O60858 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM13O60858 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRIM13O60858 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.03■■□□□ 1.28
TRIM13O60858 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM13O60858 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.02■■□□□ 1.28
TRIM13O60858 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM13O60858 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRIM13O60858 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
TRIM13O60858 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.02■■□□□ 1.28
TRIM13O60858 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.02■■□□□ 1.28
TRIM13O60858 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.01■■□□□ 1.27
TRIM13O60858 AC068473.5-201ENST00000616428 2072 ntBASIC23.01■■□□□ 1.27
TRIM13O60858 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRIM13O60858 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
TRIM13O60858 RP9P-202ENST00000450133 1212 ntBASIC23.01■■□□□ 1.27
TRIM13O60858 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
TRIM13O60858 ABCB10P4-201ENST00000566803 2184 ntBASIC23.01■■□□□ 1.27
TRIM13O60858 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.01■■□□□ 1.27
TRIM13O60858 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23■■□□□ 1.27
TRIM13O60858 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
TRIM13O60858 ECEL1P2-201ENST00000461596 1295 ntBASIC23■■□□□ 1.27
TRIM13O60858 DUSP8P5-201ENST00000422884 1815 ntBASIC23■■□□□ 1.27
TRIM13O60858 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
TRIM13O60858 HLA-L-211ENST00000482052 1765 ntBASIC22.99■■□□□ 1.27
TRIM13O60858 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRIM13O60858 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.99■■□□□ 1.27
TRIM13O60858 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRIM13O60858 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TRIM13O60858 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.98■■□□□ 1.27
TRIM13O60858 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRIM13O60858 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.98■■□□□ 1.27
TRIM13O60858 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.98■■□□□ 1.27
TRIM13O60858 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRIM13O60858 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.98■■□□□ 1.27
TRIM13O60858 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TRIM13O60858 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.98■■□□□ 1.27
TRIM13O60858 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRIM13O60858 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
TRIM13O60858 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
TRIM13O60858 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TRIM13O60858 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
TRIM13O60858 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
TRIM13O60858 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TRIM13O60858 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
TRIM13O60858 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.97■■□□□ 1.27
TRIM13O60858 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TRIM13O60858 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.96■■□□□ 1.27
TRIM13O60858 AC093536.1-201ENST00000569153 554 ntBASIC22.96■■□□□ 1.27
TRIM13O60858 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TRIM13O60858 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TRIM13O60858 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TRIM13O60858 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms