Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CACNA1FO60840 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CACNA1FO60840 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC29.95■■■□□ 2.38
CACNA1FO60840 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.95■■■□□ 2.38
CACNA1FO60840 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CACNA1FO60840 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC29.94■■■□□ 2.38
CACNA1FO60840 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CACNA1FO60840 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
CACNA1FO60840 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CACNA1FO60840 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC29.94■■■□□ 2.38
CACNA1FO60840 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CACNA1FO60840 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC29.92■■■□□ 2.38
CACNA1FO60840 AF131216.4-201ENST00000638924 1588 ntBASIC29.92■■■□□ 2.38
CACNA1FO60840 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
CACNA1FO60840 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CACNA1FO60840 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC29.92■■■□□ 2.38
CACNA1FO60840 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
CACNA1FO60840 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CACNA1FO60840 HES6-204ENST00000409182 863 ntTSL 2 BASIC29.91■■■□□ 2.38
CACNA1FO60840 RNF146-205ENST00000477776 762 ntTSL 3 BASIC29.91■■■□□ 2.38
CACNA1FO60840 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CACNA1FO60840 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC29.91■■■□□ 2.38
CACNA1FO60840 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
CACNA1FO60840 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CACNA1FO60840 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CACNA1FO60840 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CACNA1FO60840 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC29.9■■■□□ 2.38
CACNA1FO60840 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
CACNA1FO60840 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC29.89■■■□□ 2.38
CACNA1FO60840 AC090877.2-201ENST00000558441 1738 ntBASIC29.89■■■□□ 2.38
CACNA1FO60840 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
CACNA1FO60840 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CACNA1FO60840 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
CACNA1FO60840 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC29.88■■■□□ 2.37
CACNA1FO60840 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CACNA1FO60840 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
CACNA1FO60840 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC29.88■■■□□ 2.37
CACNA1FO60840 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
CACNA1FO60840 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.87■■■□□ 2.37
CACNA1FO60840 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CACNA1FO60840 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC29.86■■■□□ 2.37
CACNA1FO60840 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CACNA1FO60840 GUSBP5-201ENST00000418136 578 ntBASIC29.86■■■□□ 2.37
CACNA1FO60840 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CACNA1FO60840 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.86■■■□□ 2.37
CACNA1FO60840 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CACNA1FO60840 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
CACNA1FO60840 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CACNA1FO60840 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CACNA1FO60840 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CACNA1FO60840 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC29.85■■■□□ 2.37
CACNA1FO60840 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
CACNA1FO60840 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.85■■■□□ 2.37
CACNA1FO60840 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC29.85■■■□□ 2.37
CACNA1FO60840 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CACNA1FO60840 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CACNA1FO60840 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CACNA1FO60840 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CACNA1FO60840 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC29.84■■■□□ 2.37
CACNA1FO60840 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.84■■■□□ 2.37
CACNA1FO60840 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CACNA1FO60840 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.83■■■□□ 2.37
CACNA1FO60840 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.37
CACNA1FO60840 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
CACNA1FO60840 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC29.83■■■□□ 2.37
CACNA1FO60840 AC020928.2-201ENST00000588717 2197 ntBASIC29.83■■■□□ 2.37
CACNA1FO60840 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.83■■■□□ 2.37
CACNA1FO60840 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CACNA1FO60840 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC29.83■■■□□ 2.37
CACNA1FO60840 GAK-223ENST00000628912 497 ntTSL 5 BASIC29.83■■■□□ 2.37
CACNA1FO60840 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CACNA1FO60840 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CACNA1FO60840 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.82■■■□□ 2.36
CACNA1FO60840 AC021242.3-201ENST00000607598 1377 ntBASIC29.82■■■□□ 2.36
CACNA1FO60840 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.81■■■□□ 2.36
CACNA1FO60840 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CACNA1FO60840 LBH-205ENST00000407930 756 ntTSL 2 BASIC29.81■■■□□ 2.36
CACNA1FO60840 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
CACNA1FO60840 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC29.81■■■□□ 2.36
CACNA1FO60840 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CACNA1FO60840 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC29.81■■■□□ 2.36
CACNA1FO60840 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.81■■■□□ 2.36
CACNA1FO60840 SNX5-217ENST00000606557 1087 ntBASIC29.81■■■□□ 2.36
CACNA1FO60840 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC29.8■■■□□ 2.36
CACNA1FO60840 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC29.8■■■□□ 2.36
CACNA1FO60840 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC29.8■■■□□ 2.36
CACNA1FO60840 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC29.8■■■□□ 2.36
CACNA1FO60840 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CACNA1FO60840 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CACNA1FO60840 AC022211.4-201ENST00000625094 2161 ntBASIC29.8■■■□□ 2.36
CACNA1FO60840 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC29.79■■■□□ 2.36
CACNA1FO60840 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC29.79■■■□□ 2.36
CACNA1FO60840 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CACNA1FO60840 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
CACNA1FO60840 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CACNA1FO60840 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
CACNA1FO60840 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
CACNA1FO60840 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.78■■■□□ 2.36
CACNA1FO60840 MIR4787-201ENST00000607364 84 ntBASIC29.78■■■□□ 2.36
CACNA1FO60840 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms