Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOXO15266 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOXO15266 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHOXO15266 AC138932.3-201ENST00000567634 1902 ntBASIC19.84■□□□□ 0.77
SHOXO15266 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOXO15266 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SHOXO15266 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.84■□□□□ 0.77
SHOXO15266 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOXO15266 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.84■□□□□ 0.77
SHOXO15266 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOXO15266 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOXO15266 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SHOXO15266 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOXO15266 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOXO15266 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.83■□□□□ 0.77
SHOXO15266 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHOXO15266 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOXO15266 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.82■□□□□ 0.76
SHOXO15266 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SHOXO15266 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SHOXO15266 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SHOXO15266 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHOXO15266 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.81■□□□□ 0.76
SHOXO15266 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHOXO15266 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 HLA-V-202ENST00000446817 847 ntBASIC19.81■□□□□ 0.76
SHOXO15266 CR559946.2-201ENST00000623684 991 ntBASIC19.81■□□□□ 0.76
SHOXO15266 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SHOXO15266 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.81■□□□□ 0.76
SHOXO15266 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOXO15266 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SHOXO15266 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.8■□□□□ 0.76
SHOXO15266 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.8■□□□□ 0.76
SHOXO15266 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SHOXO15266 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOXO15266 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.79■□□□□ 0.76
SHOXO15266 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOXO15266 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHOXO15266 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.78■□□□□ 0.76
SHOXO15266 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SHOXO15266 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.78■□□□□ 0.76
SHOXO15266 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOXO15266 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOXO15266 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.77■□□□□ 0.76
SHOXO15266 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SHOXO15266 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
SHOXO15266 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.77■□□□□ 0.76
SHOXO15266 MIR3648-2-201ENST00000581792 180 ntBASIC19.77■□□□□ 0.76
SHOXO15266 MIR3648-1-201ENST00000615959 180 ntBASIC19.77■□□□□ 0.76
SHOXO15266 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.77■□□□□ 0.76
SHOXO15266 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOXO15266 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOXO15266 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.77■□□□□ 0.75
SHOXO15266 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.77■□□□□ 0.75
SHOXO15266 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHOXO15266 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHOXO15266 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.76■□□□□ 0.75
SHOXO15266 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SHOXO15266 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.76■□□□□ 0.75
SHOXO15266 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SHOXO15266 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOXO15266 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.76■□□□□ 0.75
SHOXO15266 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.76■□□□□ 0.75
SHOXO15266 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOXO15266 AL359258.2-201ENST00000564063 1566 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms