Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CBX4O00257 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
CBX4O00257 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.01■■□□□ 1.43
CBX4O00257 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.01■■□□□ 1.43
CBX4O00257 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CBX4O00257 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
CBX4O00257 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24■■□□□ 1.43
CBX4O00257 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24■■□□□ 1.43
CBX4O00257 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24■■□□□ 1.43
CBX4O00257 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
CBX4O00257 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24■■□□□ 1.43
CBX4O00257 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CBX4O00257 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CBX4O00257 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 AC131212.1-201ENST00000613771 668 ntBASIC23.99■■□□□ 1.43
CBX4O00257 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CBX4O00257 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.98■■□□□ 1.43
CBX4O00257 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
CBX4O00257 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.98■■□□□ 1.43
CBX4O00257 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CBX4O00257 AC011551.1-201ENST00000614101 683 ntBASIC23.98■■□□□ 1.43
CBX4O00257 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
CBX4O00257 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
CBX4O00257 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.97■■□□□ 1.43
CBX4O00257 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CBX4O00257 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.97■■□□□ 1.43
CBX4O00257 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
CBX4O00257 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CBX4O00257 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.96■■□□□ 1.43
CBX4O00257 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CBX4O00257 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.96■■□□□ 1.43
CBX4O00257 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.96■■□□□ 1.43
CBX4O00257 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
CBX4O00257 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.96■■□□□ 1.43
CBX4O00257 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.96■■□□□ 1.43
CBX4O00257 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
CBX4O00257 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
CBX4O00257 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.95■■□□□ 1.42
CBX4O00257 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CBX4O00257 AC090877.2-201ENST00000558441 1738 ntBASIC23.95■■□□□ 1.42
CBX4O00257 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.94■■□□□ 1.42
CBX4O00257 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
CBX4O00257 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CBX4O00257 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
CBX4O00257 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CBX4O00257 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.94■■□□□ 1.42
CBX4O00257 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.94■■□□□ 1.42
CBX4O00257 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
CBX4O00257 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CBX4O00257 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
CBX4O00257 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
CBX4O00257 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 GUSBP5-201ENST00000418136 578 ntBASIC23.93■■□□□ 1.42
CBX4O00257 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.93■■□□□ 1.42
CBX4O00257 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.93■■□□□ 1.42
CBX4O00257 MIR4281-201ENST00000580852 62 ntBASIC23.93■■□□□ 1.42
CBX4O00257 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
CBX4O00257 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CBX4O00257 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
CBX4O00257 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CBX4O00257 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.91■■□□□ 1.42
CBX4O00257 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.91■■□□□ 1.42
CBX4O00257 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.91■■□□□ 1.42
CBX4O00257 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CBX4O00257 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
CBX4O00257 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.91■■□□□ 1.42
CBX4O00257 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CBX4O00257 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
CBX4O00257 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.91■■□□□ 1.42
CBX4O00257 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CBX4O00257 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CBX4O00257 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CBX4O00257 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CBX4O00257 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms