Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.99■■□□□ 1.75
TRIM43BA6NCK2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 MIR6722-201ENST00000617286 78 ntBASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 MIR6821-201ENST00000617625 74 ntBASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TRIM43BA6NCK2 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 AF213884.3-201ENST00000563833 479 ntBASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
TRIM43BA6NCK2 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 SRD5A1P1-201ENST00000442297 786 ntBASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.96■■□□□ 1.75
TRIM43BA6NCK2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
TRIM43BA6NCK2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
TRIM43BA6NCK2 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM43BA6NCK2 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM43BA6NCK2 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM43BA6NCK2 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
TRIM43BA6NCK2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.94■■□□□ 1.74
TRIM43BA6NCK2 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.94■■□□□ 1.74
TRIM43BA6NCK2 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.94■■□□□ 1.74
TRIM43BA6NCK2 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 AC097381.1-201ENST00000429019 1296 ntBASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.93■■□□□ 1.74
TRIM43BA6NCK2 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 MIR939-201ENST00000401314 82 ntBASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 AC087623.3-201ENST00000607047 1098 ntBASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
TRIM43BA6NCK2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
TRIM43BA6NCK2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.91■■□□□ 1.74
TRIM43BA6NCK2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
TRIM43BA6NCK2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.9■■□□□ 1.74
TRIM43BA6NCK2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.9■■□□□ 1.74
TRIM43BA6NCK2 AL162430.1-201ENST00000480705 870 ntBASIC25.9■■□□□ 1.74
TRIM43BA6NCK2 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
TRIM43BA6NCK2 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
TRIM43BA6NCK2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TRIM43BA6NCK2 AP001330.3-201ENST00000520123 633 ntBASIC25.89■■□□□ 1.74
TRIM43BA6NCK2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
TRIM43BA6NCK2 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.89■■□□□ 1.74
TRIM43BA6NCK2 AP004609.3-201ENST00000610705 1884 ntBASIC25.88■■□□□ 1.73
TRIM43BA6NCK2 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
TRIM43BA6NCK2 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.88■■□□□ 1.73
TRIM43BA6NCK2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRIM43BA6NCK2 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
TRIM43BA6NCK2 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.87■■□□□ 1.73
TRIM43BA6NCK2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
TRIM43BA6NCK2 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.87■■□□□ 1.73
TRIM43BA6NCK2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.87■■□□□ 1.73
TRIM43BA6NCK2 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TRIM43BA6NCK2 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TRIM43BA6NCK2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRIM43BA6NCK2 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
TRIM43BA6NCK2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TRIM43BA6NCK2 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM43BA6NCK2 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM43BA6NCK2 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM43BA6NCK2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM43BA6NCK2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 FOXO3B-201ENST00000395675 1928 ntBASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 AC091305.1-201ENST00000479476 895 ntBASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.82■■□□□ 1.72
TRIM43BA6NCK2 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms