Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.14■■□□□ 1.78
NPHP3-ACAD11A0A0J9YXS1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 KRT8P33-201ENST00000508125 1423 ntBASIC26.14■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 AC019171.1-201ENST00000601251 1056 ntBASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.12■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 AC074183.2-201ENST00000623112 922 ntBASIC26.12■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.12■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 AC103834.1-201ENST00000520383 144 ntBASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.1■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.1■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.1■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.1■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 AL592295.1-201ENST00000400984 884 ntBASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NPHP3-ACAD11A0A0J9YXS1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.07■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.06■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 MIR6089-201ENST00000616698 64 ntBASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.04■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.03■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 AC135731.1-201ENST00000569415 2548 ntBASIC26.03■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
NPHP3-ACAD11A0A0J9YXS1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NPHP3-ACAD11A0A0J9YXS1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms