Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 RARRES2P2-201ENST00000394842 485 ntBASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 SPCS2P3-201ENST00000500401 656 ntBASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAV39A0A0B4J263 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV39A0A0B4J263 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV39A0A0B4J263 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.58■□□□□ 0.73
TRAV39A0A0B4J263 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.58■□□□□ 0.73
TRAV39A0A0B4J263 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV39A0A0B4J263 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.72
TRAV39A0A0B4J263 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV39A0A0B4J263 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.58■□□□□ 0.72
TRAV39A0A0B4J263 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV39A0A0B4J263 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV39A0A0B4J263 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 FOXO3B-201ENST00000395675 1928 ntBASIC19.56■□□□□ 0.72
TRAV39A0A0B4J263 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 U85056.1-201ENST00000616429 682 ntBASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
TRAV39A0A0B4J263 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV39A0A0B4J263 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV39A0A0B4J263 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 AC018755.3-202ENST00000596210 929 ntBASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV39A0A0B4J263 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV39A0A0B4J263 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
TRAV39A0A0B4J263 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV39A0A0B4J263 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV39A0A0B4J263 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
TRAV39A0A0B4J263 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 DUX4L9-201ENST00000449051 1259 ntBASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
TRAV39A0A0B4J263 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 MIR6089-201ENST00000616698 64 ntBASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRAV39A0A0B4J263 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms