Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.792e-10■■■■■ 33.6
DDX42Q86XP3 MAN2A2-229ENST00000561240 460 ntTSL 418.31■□□□□ 0.521e-6■■■■■ 32.8
DDX42Q86XP3 MAN2A2-224ENST00000560616 988 ntTSL 517.12■□□□□ 0.331e-6■■■■■ 32.8
DDX42Q86XP3 MAN2A2-205ENST00000558171 790 ntTSL 515.89■□□□□ 0.131e-6■■■■■ 32.8
DDX42Q86XP3 MAN2A2-220ENST00000560192 2469 ntTSL 1 (best)14.23□□□□□ -0.131e-6■■■■■ 32.8
DDX42Q86XP3 MAN2A2-222ENST00000560505 643 ntTSL 213.68□□□□□ -0.221e-6■■■■■ 32.8
DDX42Q86XP3 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.064e-18■■■■■ 32.5
DDX42Q86XP3 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.024e-18■■■■■ 32.5
DDX42Q86XP3 SYCP2L-202ENST00000341041 3069 ntTSL 212.79□□□□□ -0.364e-18■■■■■ 32.5
DDX42Q86XP3 AC079781.5-201ENST00000641390 3211 nt20.15■□□□□ 0.821e-7■■■■■ 32.4
DDX42Q86XP3 AC079781.5-203ENST00000641315 2059 nt19.52■□□□□ 0.721e-7■■■■■ 32.4
DDX42Q86XP3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.361e-7■■■■■ 32.4
DDX42Q86XP3 AC079781.5-202ENST00000641784 3743 ntBASIC16.15■□□□□ 0.181e-7■■■■■ 32.4
DDX42Q86XP3 ASNS-202ENST00000394308 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.671e-7■■■■■ 32.4
DDX42Q86XP3 ASNS-205ENST00000422745 1865 ntTSL 5 BASIC10.31□□□□□ -0.761e-7■■■■■ 32.4
DDX42Q86XP3 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC7.8□□□□□ -1.161e-7■■■■■ 32.4
DDX42Q86XP3 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.85□□□□□ -1.311e-7■■■■■ 32.4
DDX42Q86XP3 RPL18-211ENST00000550973 1111 ntTSL 521.64■■□□□ 1.056e-7■■■■■ 32.2
DDX42Q86XP3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.38■■□□□ 1.016e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-208ENST00000466653 2315 ntTSL 218.82■□□□□ 0.66e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-212ENST00000551749 2091 ntTSL 218.72■□□□□ 0.596e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-213ENST00000552347 1645 ntTSL 518.6■□□□□ 0.576e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.25■□□□□ 0.516e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.25■□□□□ 0.516e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.516e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-204ENST00000418304 1759 ntTSL 518.1■□□□□ 0.496e-7■■■■■ 32.2
DDX42Q86XP3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.436e-7■■■■■ 32.2
DDX42Q86XP3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.69■□□□□ 0.426e-7■■■■■ 32.2
DDX42Q86XP3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.22■□□□□ 0.356e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-206ENST00000549370 628 ntTSL 517.02■□□□□ 0.326e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.62■□□□□ 0.256e-7■■■■■ 32.2
DDX42Q86XP3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.246e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-207ENST00000462969 273 ntTSL 215.31■□□□□ 0.046e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.016e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-204ENST00000547897 440 ntTSL 514.58□□□□□ -0.086e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC13.89□□□□□ -0.196e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-215ENST00000552705 1081 ntTSL 213.68□□□□□ -0.226e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-210ENST00000550671 764 ntTSL 213.51□□□□□ -0.256e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-203ENST00000547892 3844 nt13.08□□□□□ -0.326e-7■■■■■ 32.2
DDX42Q86XP3 RPL18-216ENST00000552851 691 ntTSL 513.01□□□□□ -0.336e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)12.58□□□□□ -0.46e-7■■■■■ 32.2
DDX42Q86XP3 ARID4B-205ENST00000421364 5151 ntTSL 1 (best)12.58□□□□□ -0.46e-7■■■■■ 32.2
DDX42Q86XP3 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.616e-7■■■■■ 32.2
DDX42Q86XP3 MBNL2-206ENST00000469707 2574 ntTSL 1 (best)8.67□□□□□ -1.026e-7■■■■■ 32.2
DDX42Q86XP3 MGEA5-204ENST00000429860 769 ntTSL 38.4□□□□□ -1.066e-7■■■■■ 32.2
DDX42Q86XP3 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.12□□□□□ -1.276e-7■■■■■ 32.2
DDX42Q86XP3 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.36e-7■■■■■ 32.2
DDX42Q86XP3 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.55□□□□□ -1.366e-7■■■■■ 32.2
DDX42Q86XP3 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.96□□□□□ -1.466e-7■■■■■ 32.2
DDX42Q86XP3 VEGFA-216ENST00000512683 475 ntTSL 1 (best)13.43□□□□□ -0.263e-10■■■■■ 30.6
DDX42Q86XP3 CYBRD1-207ENST00000494587 549 ntTSL 418.69■□□□□ 0.584e-6■■■■■ 30.2
DDX42Q86XP3 CYBRD1-205ENST00000468308 763 ntTSL 316.65■□□□□ 0.264e-6■■■■■ 30.2
DDX42Q86XP3 CYBRD1-206ENST00000474182 465 ntTSL 515.97■□□□□ 0.154e-6■■■■■ 30.2
DDX42Q86XP3 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.85□□□□□ -0.194e-6■■■■■ 30.2
DDX42Q86XP3 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.354e-6■■■■■ 30.2
DDX42Q86XP3 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.364e-6■■■■■ 30.2
DDX42Q86XP3 CYBRD1-202ENST00000375252 3540 ntTSL 1 (best) BASIC12.65□□□□□ -0.384e-6■■■■■ 30.2
DDX42Q86XP3 CAD-206ENST00000464159 589 ntTSL 311.04□□□□□ -0.644e-6■■■■■ 30.2
DDX42Q86XP3 CYBRD1-201ENST00000321348 4365 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.664e-6■■■■■ 30.2
DDX42Q86XP3 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC7.17□□□□□ -1.264e-6■■■■■ 30.2
DDX42Q86XP3 ROR2-203ENST00000476440 316 ntTSL 56.58□□□□□ -1.364e-6■■■■■ 30.2
DDX42Q86XP3 ZYX-207ENST00000457235 703 ntTSL 427.02■■□□□ 1.922e-6■■■■■ 29.9
DDX42Q86XP3 EZH2-210ENST00000498186 1876 ntTSL 225.87■■□□□ 1.732e-6■■■■■ 29.9
DDX42Q86XP3 EZH2-207ENST00000483012 1491 ntTSL 225.77■■□□□ 1.722e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-206ENST00000465369 1956 ntTSL 525.09■■□□□ 1.612e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-205ENST00000430047 451 ntTSL 324.68■■□□□ 1.542e-6■■■■■ 29.9
DDX42Q86XP3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.63■■□□□ 1.372e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.372e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-208ENST00000468083 1146 ntTSL 522.97■■□□□ 1.272e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-205ENST00000465187 585 ntTSL 422.84■■□□□ 1.252e-6■■■■■ 29.9
DDX42Q86XP3 MAP1LC3B-206ENST00000564844 3085 ntTSL 1 (best)22.72■■□□□ 1.232e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-203ENST00000443790 730 ntTSL 221.11■□□□□ 0.972e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.71■□□□□ 0.752e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-206ENST00000449630 533 ntTSL 419.52■□□□□ 0.722e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.692e-6■■■■■ 29.9
DDX42Q86XP3 ZSWIM8-204ENST00000431225 1687 ntTSL 518.55■□□□□ 0.562e-6■■■■■ 29.9
DDX42Q86XP3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.46■□□□□ 0.552e-6■■■■■ 29.9
DDX42Q86XP3 MAP1LC3B-208ENST00000570189 1259 ntTSL 1 (best)18.14■□□□□ 0.492e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.35■□□□□ 0.372e-6■■■■■ 29.9
DDX42Q86XP3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.362e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-210ENST00000462023 521 ntTSL 216.48■□□□□ 0.232e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 216.03■□□□□ 0.162e-6■■■■■ 29.9
DDX42Q86XP3 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.052e-6■■■■■ 29.9
DDX42Q86XP3 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.042e-6■■■■■ 29.9
DDX42Q86XP3 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.032e-6■■■■■ 29.9
DDX42Q86XP3 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.042e-6■■■■■ 29.9
DDX42Q86XP3 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.69□□□□□ -0.062e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.142e-6■■■■■ 29.9
DDX42Q86XP3 EDEM1-202ENST00000434243 978 ntTSL 214.12□□□□□ -0.152e-6■■■■■ 29.9
DDX42Q86XP3 AKNA-201ENST00000223791 4414 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.192e-6■■■■■ 29.9
DDX42Q86XP3 AKNA-202ENST00000307564 7380 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.32e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC11.47□□□□□ -0.572e-6■■■■■ 29.9
DDX42Q86XP3 ZYX-209ENST00000477373 504 ntTSL 411.18□□□□□ -0.622e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-214ENST00000588123 814 ntTSL 59.94□□□□□ -0.822e-6■■■■■ 29.9
DDX42Q86XP3 MAP1LC3B-205ENST00000564638 735 ntTSL 27.82□□□□□ -1.162e-6■■■■■ 29.9
DDX42Q86XP3 NFE2L2-213ENST00000586532 942 ntTSL 55.94□□□□□ -1.462e-6■■■■■ 29.9
DDX42Q86XP3 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.63□□□□□ -1.354e-6■■■■■ 29.4
DDX42Q86XP3 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC13.27□□□□□ -0.296e-10■■■■■ 29.2
DDX42Q86XP3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.672e-6■■■■■ 28.5
DDX42Q86XP3 HNRNPK-206ENST00000457156 1283 ntTSL 519.08■□□□□ 0.642e-6■■■■■ 28.5
Retrieved 100 of 2,477 protein–RNA pairs in 29.4 ms