Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CMC4P56277 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CMC4P56277 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CMC4P56277 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CMC4P56277 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CMC4P56277 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CMC4P56277 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CMC4P56277 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CMC4P56277 AP002365.1-201ENST00000603448 772 ntBASIC21.42■■□□□ 1.02
CMC4P56277 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CMC4P56277 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CMC4P56277 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CMC4P56277 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC21.4■■□□□ 1.02
CMC4P56277 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
CMC4P56277 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CMC4P56277 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CMC4P56277 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CMC4P56277 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.35■■□□□ 1.01
CMC4P56277 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.33■■□□□ 1.01
CMC4P56277 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC21.32■■□□□ 1
CMC4P56277 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC21.3■■□□□ 1
CMC4P56277 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.27■■□□□ 1
CMC4P56277 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.27■■□□□ 1
CMC4P56277 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
CMC4P56277 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CMC4P56277 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CMC4P56277 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
CMC4P56277 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CMC4P56277 DYNLL1-208ENST00000550178 581 ntBASIC21.25■□□□□ 0.99
CMC4P56277 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CMC4P56277 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC21.23■□□□□ 0.99
CMC4P56277 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.22■□□□□ 0.99
CMC4P56277 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.21■□□□□ 0.99
CMC4P56277 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CMC4P56277 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CMC4P56277 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CMC4P56277 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.18■□□□□ 0.98
CMC4P56277 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CMC4P56277 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CMC4P56277 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.15■□□□□ 0.98
CMC4P56277 MVK-208ENST00000539696 608 ntTSL 5 BASIC21.15■□□□□ 0.98
CMC4P56277 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.15■□□□□ 0.98
CMC4P56277 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CMC4P56277 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CMC4P56277 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CMC4P56277 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CMC4P56277 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CMC4P56277 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CMC4P56277 AL031258.1-201ENST00000623562 325 ntBASIC21.11■□□□□ 0.97
CMC4P56277 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CMC4P56277 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CMC4P56277 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CMC4P56277 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC21.05■□□□□ 0.96
CMC4P56277 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.05■□□□□ 0.96
CMC4P56277 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CMC4P56277 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CMC4P56277 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CMC4P56277 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CMC4P56277 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CMC4P56277 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CMC4P56277 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.97■□□□□ 0.95
CMC4P56277 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CMC4P56277 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.95■□□□□ 0.94
CMC4P56277 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CMC4P56277 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CMC4P56277 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CMC4P56277 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CMC4P56277 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.9■□□□□ 0.94
CMC4P56277 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.9■□□□□ 0.94
CMC4P56277 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.9■□□□□ 0.94
CMC4P56277 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CMC4P56277 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.89■□□□□ 0.93
CMC4P56277 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.89■□□□□ 0.93
CMC4P56277 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CMC4P56277 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CMC4P56277 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CMC4P56277 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CMC4P56277 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CMC4P56277 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.86■□□□□ 0.93
CMC4P56277 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CMC4P56277 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CMC4P56277 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CMC4P56277 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CMC4P56277 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CMC4P56277 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CMC4P56277 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.79■□□□□ 0.92
CMC4P56277 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC20.78■□□□□ 0.92
CMC4P56277 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CMC4P56277 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
CMC4P56277 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CMC4P56277 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CMC4P56277 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CMC4P56277 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.75■□□□□ 0.91
CMC4P56277 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.75■□□□□ 0.91
CMC4P56277 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.74■□□□□ 0.91
CMC4P56277 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CMC4P56277 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.73■□□□□ 0.91
CMC4P56277 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CMC4P56277 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CMC4P56277 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms