Protein–RNA interactions for Protein: P47821

SSN8, RNA polymerase II holoenzyme cyclin-like subunit, yeastyeast

Predictions only

Length 323 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSN8P47821 BOR1YNL275W 1731 nt10.75□□□□□ -0.69
SSN8P47821 PCH2YBR186W 1695 nt10.75□□□□□ -0.69
SSN8P47821 MNP1YGL068W 585 nt10.74□□□□□ -0.69
SSN8P47821 SUF2tP(AGG)C 72 nt10.74□□□□□ -0.69
SSN8P47821 SUF10tP(AGG)N 72 nt10.74□□□□□ -0.69
SSN8P47821 RPP2AYOL039W 321 nt10.72□□□□□ -0.69
SSN8P47821 SDH1YKL148C 1923 nt10.69□□□□□ -0.7
SSN8P47821 RKM5YLR137W 1104 nt10.68□□□□□ -0.7
SSN8P47821 YDL221WYDL221W 552 nt10.67□□□□□ -0.7
SSN8P47821 PTP1YDL230W 1008 nt10.67□□□□□ -0.7
SSN8P47821 SIS1YNL007C 1059 nt10.67□□□□□ -0.7
SSN8P47821 SEC11YIR022W 504 nt10.63□□□□□ -0.71
SSN8P47821 CAC2YML102W 1407 nt10.6□□□□□ -0.71
SSN8P47821 PIB2YGL023C 1908 nt10.6□□□□□ -0.71
SSN8P47821 RDN37-1RDN37-1 5354 nt10.58□□□□□ -0.72
SSN8P47821 RDN37-2RDN37-2 5354 nt10.58□□□□□ -0.72
SSN8P47821 YOL037CYOL037C 354 nt10.53□□□□□ -0.72
SSN8P47821 SCC4YER147C 1875 nt10.5□□□□□ -0.73
SSN8P47821 ART5YGR068C 1761 nt10.49□□□□□ -0.73
SSN8P47821 GFD2YCL036W 1701 nt10.47□□□□□ -0.73
SSN8P47821 PET9YBL030C 957 nt10.47□□□□□ -0.73
SSN8P47821 YOR139CYOR139C 393 nt10.47□□□□□ -0.73
SSN8P47821 IRC15YPL017C 1500 nt10.45□□□□□ -0.74
SSN8P47821 NPL3YDR432W 1245 nt10.45□□□□□ -0.74
SSN8P47821 YCH1YGR203W 447 nt10.44□□□□□ -0.74
SSN8P47821 TIR4YOR009W 1464 nt10.42□□□□□ -0.74
SSN8P47821 ALG12YNR030W 1656 nt10.39□□□□□ -0.75
SSN8P47821 YLR154C-GYLR154C-G 150 nt10.38□□□□□ -0.75
SSN8P47821 GIS3YLR094C 1509 nt10.38□□□□□ -0.75
SSN8P47821 RTS2YOR077W 699 nt10.37□□□□□ -0.75
SSN8P47821 YJL152WYJL152W 360 nt10.33□□□□□ -0.76
SSN8P47821 RPM1RPM1 483 nt10.33□□□□□ -0.76
SSN8P47821 YMR057CYMR057C 372 nt10.33□□□□□ -0.76
SSN8P47821 RTF1YGL244W 1677 nt10.33□□□□□ -0.76
SSN8P47821 YSC84YHR016C 1407 nt10.32□□□□□ -0.76
SSN8P47821 MOT3YMR070W 1473 nt10.3□□□□□ -0.76
SSN8P47821 CUE1YMR264W 612 nt10.3□□□□□ -0.76
SSN8P47821 YLR281CYLR281C 468 nt10.28□□□□□ -0.76
SSN8P47821 WHI5YOR083W 888 nt10.28□□□□□ -0.76
SSN8P47821 YHL050CYHL050C 2094 nt10.28□□□□□ -0.76
SSN8P47821 BOP3YNL042W 1191 nt10.22□□□□□ -0.77
SSN8P47821 PTK1YKL198C 1989 nt10.21□□□□□ -0.77
SSN8P47821 YCL048W-AYCL048W-A 240 nt10.21□□□□□ -0.77
SSN8P47821 YIL100WYIL100W 354 nt10.19□□□□□ -0.78
SSN8P47821 YLR236CYLR236C 324 nt10.18□□□□□ -0.78
SSN8P47821 HSL7YBR133C 2484 nt10.12□□□□□ -0.79
SSN8P47821 PUS2YGL063W 1113 nt10.12□□□□□ -0.79
SSN8P47821 YNL195CYNL195C 786 nt10.12□□□□□ -0.79
SSN8P47821 IDH1YNL037C 1083 nt10.11□□□□□ -0.79
SSN8P47821 RRT12YCR045C 1476 nt10.1□□□□□ -0.79
SSN8P47821 HSP60YLR259C 1719 nt10.1□□□□□ -0.79
SSN8P47821 IMP2'YIL154C 1041 nt10.09□□□□□ -0.79
SSN8P47821 tM(CAU)CtM(CAU)C 72 nt10.08□□□□□ -0.8
SSN8P47821 IMT4tM(CAU)E 72 nt10.08□□□□□ -0.8
SSN8P47821 IMT3tM(CAU)J3 72 nt10.08□□□□□ -0.8
SSN8P47821 IMT1tM(CAU)O1 72 nt10.08□□□□□ -0.8
SSN8P47821 IMT2tM(CAU)P 72 nt10.08□□□□□ -0.8
SSN8P47821 DSK2YMR276W 1122 nt10.05□□□□□ -0.8
SSN8P47821 DED1YOR204W 1815 nt10.05□□□□□ -0.8
SSN8P47821 NAR1YNL240C 1476 nt10.04□□□□□ -0.8
SSN8P47821 GBP2YCL011C 1284 nt10.04□□□□□ -0.8
SSN8P47821 NCP1YHR042W 2076 nt10.01□□□□□ -0.81
SSN8P47821 RDN25-1RDN25-1 3396 nt9.98□□□□□ -0.81
SSN8P47821 RDN25-2RDN25-2 3396 nt9.98□□□□□ -0.81
SSN8P47821 RRD1YIL153W 1182 nt9.97□□□□□ -0.81
SSN8P47821 TCD2YKL027W 1344 nt9.96□□□□□ -0.82
SSN8P47821 YPR011CYPR011C 981 nt9.94□□□□□ -0.82
SSN8P47821 HEL2YDR266C 1920 nt9.93□□□□□ -0.82
SSN8P47821 SPT8YLR055C 1809 nt9.93□□□□□ -0.82
SSN8P47821 YDR433WYDR433W 441 nt9.92□□□□□ -0.82
SSN8P47821 YFL054CYFL054C 1941 nt9.92□□□□□ -0.82
SSN8P47821 FMP52YER004W 696 nt9.91□□□□□ -0.82
SSN8P47821 CMP2YML057W 1815 nt9.9□□□□□ -0.82
SSN8P47821 FMP45YDL222C 930 nt9.89□□□□□ -0.83
SSN8P47821 ERV46YAL042W 1248 nt9.86□□□□□ -0.83
SSN8P47821 FMT1YBL013W 1206 nt9.84□□□□□ -0.83
SSN8P47821 MXR2YCL033C 507 nt9.84□□□□□ -0.83
SSN8P47821 LPX1YOR084W 1164 nt9.83□□□□□ -0.84
SSN8P47821 YKR040CYKR040C 504 nt9.81□□□□□ -0.84
SSN8P47821 PCM1YEL058W 1674 nt9.8□□□□□ -0.84
SSN8P47821 SFP1YLR403W 2052 nt9.79□□□□□ -0.84
SSN8P47821 GLK1YCL040W 1503 nt9.78□□□□□ -0.84
SSN8P47821 LCB1YMR296C 1677 nt9.78□□□□□ -0.84
SSN8P47821 SOR2YDL246C 1074 nt9.77□□□□□ -0.85
SSN8P47821 SOR1YJR159W 1074 nt9.77□□□□□ -0.85
SSN8P47821 CWP1YKL096W 720 nt9.77□□□□□ -0.85
SSN8P47821 YAT1YAR035W 2064 nt9.77□□□□□ -0.85
SSN8P47821 ADH2YMR303C 1047 nt9.76□□□□□ -0.85
SSN8P47821 YCL042WYCL042W 360 nt9.76□□□□□ -0.85
SSN8P47821 MET2YNL277W 1461 nt9.75□□□□□ -0.85
SSN8P47821 SNF6YHL025W 999 nt9.74□□□□□ -0.85
SSN8P47821 NPP1YCR026C 2229 nt9.73□□□□□ -0.85
SSN8P47821 SIM1YIL123W 1431 nt9.73□□□□□ -0.85
SSN8P47821 FRD1YEL047C 1413 nt9.71□□□□□ -0.86
SSN8P47821 SSN3YPL042C 1668 nt9.71□□□□□ -0.86
SSN8P47821 SWE1YJL187C 2460 nt9.69□□□□□ -0.86
SSN8P47821 PBP1YGR178C 2169 nt9.68□□□□□ -0.86
SSN8P47821 CYT2YKL087C 675 nt9.66□□□□□ -0.86
SSN8P47821 GID7YCL039W 2238 nt9.66□□□□□ -0.86
SSN8P47821 BIO4YNR057C 714 nt9.65□□□□□ -0.86
Retrieved 100 of 7,029 protein–RNA pairs in 11.6 ms