RNA–Protein interactions for RNA: YLR403W

SFP1, Transcript of Regulates transcription of ribosomal protein and biogenesis genes, yeast

Gene SFP1, Length 2,052 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SFP1	YLR403W	RQC2	Q12532	1038 aa	Known RBP	14.83	□□□□□ -0.04
SFP1	YLR403W	BFR2	Q06631	534 aa	Known RBP	14.64	□□□□□ -0.07
SFP1	YLR403W	URN1	Q06525	465 aa	Known RBP	13.38	□□□□□ -0.27
SFP1	YLR403W	NOP2	P40991	618 aa	Known RBP	13.24	□□□□□ -0.29
SFP1	YLR403W	TAF7	Q05021	590 aa		13.16	□□□□□ -0.3
SFP1	YLR403W	EBP2	P36049	427 aa	Known RBP	13.14	□□□□□ -0.31
SFP1	YLR403W	CAB3	P36076	571 aa		13.05	□□□□□ -0.32
SFP1	YLR403W	SIS2	P36024	562 aa		13	□□□□□ -0.33
SFP1	YLR403W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	12.62	□□□□□ -0.39	not detected
SFP1	YLR403W	AVT3	P36062	692 aa		12.6	□□□□□ -0.39
SFP1	YLR403W	YFR016C	P43597	1233 aa	Known RBP	12.58	□□□□□ -0.39
SFP1	YLR403W	YPR148C	Q06523	435 aa		12.46	□□□□□ -0.41
SFP1	YLR403W	RPS0B	P46654	252 aa	Known RBP	12.31	□□□□□ -0.44
SFP1	YLR403W	DIP2	Q12220	943 aa	Predicted RBP	12.17	□□□□□ -0.46
SFP1	YLR403W	KRI1	P42846	591 aa	Known RBP	12.15	□□□□□ -0.46
SFP1	YLR403W	CWC22	P53333	577 aa	Known RBP	12.13	□□□□□ -0.47
SFP1	YLR403W	YRB30	P53107	440 aa	Predicted RBP	12.1	□□□□□ -0.47
SFP1	YLR403W	TFA1	P36100	482 aa		12.06	□□□□□ -0.48
SFP1	YLR403W	TCB2	P48231	1178 aa		11.92	□□□□□ -0.5
SFP1	YLR403W	SKI3	P17883	1432 aa	Known RBP	11.91	□□□□□ -0.5
SFP1	YLR403W	RSE1	Q04693	1361 aa	Known RBP	11.9	□□□□□ -0.5
SFP1	YLR403W	IOC4	Q04213	475 aa		11.83	□□□□□ -0.51
SFP1	YLR403W	NAP1	P25293	417 aa	Known RBP	11.82	□□□□□ -0.52
SFP1	YLR403W	ENV11	P53246	860 aa		11.81	□□□□□ -0.52
SFP1	YLR403W	DEF1	P35732	738 aa	Known RBP	11.79	□□□□□ -0.52
SFP1	YLR403W	LEO1	P38439	464 aa		11.73	□□□□□ -0.53
SFP1	YLR403W	AIM44	Q99299	758 aa		11.72	□□□□□ -0.53
SFP1	YLR403W	MNN4	P36044	1178 aa		11.71	□□□□□ -0.54
SFP1	YLR403W	NUG1	P40010	520 aa	Known RBP	11.71	□□□□□ -0.54
SFP1	YLR403W	PSH1	Q12161	406 aa		11.67	□□□□□ -0.54
SFP1	YLR403W	SPT7	P35177	1332 aa		11.67	□□□□□ -0.54
SFP1	YLR403W	NOP53	Q12080	455 aa	Known RBP	11.66	□□□□□ -0.54
SFP1	YLR403W	RLF2	Q12495	606 aa		11.62	□□□□□ -0.55
SFP1	YLR403W	TCB3	Q03640	1545 aa	Known RBP	11.59	□□□□□ -0.55
SFP1	YLR403W	SPA2	P23201	1466 aa	Known RBP	11.59	□□□□□ -0.55
SFP1	YLR403W	ENP1	P38333	483 aa	Known RBP	11.58	□□□□□ -0.56
SFP1	YLR403W	SPT21	P35209	758 aa		11.58	□□□□□ -0.56
SFP1	YLR403W	YGR130C	P53278	816 aa		11.58	□□□□□ -0.56
SFP1	YLR403W	SEC3	P33332	1336 aa	Known RBP	11.57	□□□□□ -0.56
SFP1	YLR403W	FPR3	P38911	411 aa	Known RBP	11.55	□□□□□ -0.56
SFP1	YLR403W	QCR6	P00127	147 aa		11.54	□□□□□ -0.56
SFP1	YLR403W	CLC1	P17891	233 aa		11.53	□□□□□ -0.56
SFP1	YLR403W	DRS1	P32892	752 aa	Known RBP	11.53	□□□□□ -0.56
SFP1	YLR403W	SPT2	P06843	333 aa	Predicted RBP	11.49	□□□□□ -0.57
SFP1	YLR403W	RLP24	Q07915	199 aa	Known RBP	11.48	□□□□□ -0.57
SFP1	YLR403W	FPR4	Q06205	392 aa	Predicted RBP	11.47	□□□□□ -0.57
SFP1	YLR403W	SGS1	P35187	1447 aa		11.45	□□□□□ -0.58
SFP1	YLR403W	RNA1	P11745	407 aa	Known RBP	11.44	□□□□□ -0.58
SFP1	YLR403W	IME2	P32581	645 aa		11.41	□□□□□ -0.58
SFP1	YLR403W	IFH1	P39520	1085 aa		11.4	□□□□□ -0.58
SFP1	YLR403W	HSP82	P02829	709 aa	Known RBP	11.36	□□□□□ -0.59
SFP1	YLR403W	SNU71	P53207	620 aa	Known RBP	11.36	□□□□□ -0.59
SFP1	YLR403W	PLP2	Q12017	286 aa		11.34	□□□□□ -0.59
SFP1	YLR403W	FUN12	P39730	1002 aa	Known RBP	11.33	□□□□□ -0.6
SFP1	YLR403W	YTA7	P40340	1379 aa		11.33	□□□□□ -0.6
SFP1	YLR403W	SPC110	P32380	944 aa		11.32	□□□□□ -0.6
SFP1	YLR403W	RIX1	P38883	763 aa	Predicted RBP	11.32	□□□□□ -0.6
SFP1	YLR403W	INO80	P53115	1489 aa		11.3	□□□□□ -0.6
SFP1	YLR403W	STH1	P32597	1359 aa		11.3	□□□□□ -0.6
SFP1	YLR403W	MDG1	P53885	366 aa		11.28	□□□□□ -0.6
SFP1	YLR403W	RPN1	P38764	993 aa	Known RBP	11.27	□□□□□ -0.61
SFP1	YLR403W	YNL011C	P53980	444 aa		11.27	□□□□□ -0.61
SFP1	YLR403W	SSN2	P38931	1420 aa		11.26	□□□□□ -0.61
SFP1	YLR403W	NMD2	P38798	1089 aa	Known RBP	11.26	□□□□□ -0.61
SFP1	YLR403W	GRX3	Q03835	250 aa		11.25	□□□□□ -0.61
SFP1	YLR403W	MTC1	P47018	478 aa	Known RBP	11.24	□□□□□ -0.61
SFP1	YLR403W	TOP1	P04786	769 aa		11.23	□□□□□ -0.61
SFP1	YLR403W	TIF4632	P39936	914 aa	Known RBP	11.22	□□□□□ -0.61
SFP1	YLR403W	VPS4	P52917	437 aa		11.21	□□□□□ -0.62
SFP1	YLR403W	PIL1	P53252	339 aa	Known RBP	11.21	□□□□□ -0.62
SFP1	YLR403W	SAS10	Q12136	610 aa	Predicted RBP	11.19	□□□□□ -0.62
SFP1	YLR403W	PRS1	P32895	427 aa	Known RBP	11.18	□□□□□ -0.62
SFP1	YLR403W	OPY1	P38271	328 aa		11.18	□□□□□ -0.62
SFP1	YLR403W	ETT1	Q08421	412 aa	Known RBP	11.15	□□□□□ -0.62
SFP1	YLR403W	EAF7	P53911	425 aa	Known RBP	11.13	□□□□□ -0.63
SFP1	YLR403W	RPS0A	P32905	252 aa	Known RBP	11.1	□□□□□ -0.63
SFP1	YLR403W	SWE1	P32944	819 aa		11.1	□□□□□ -0.63
SFP1	YLR403W	HIF1	Q12373	385 aa		11.08	□□□□□ -0.63
SFP1	YLR403W	PAF1	P38351	445 aa		11.08	□□□□□ -0.64
SFP1	YLR403W	DOS2	P54858	310 aa		11.08	□□□□□ -0.64
SFP1	YLR403W	TLG1	Q03322	224 aa		11.07	□□□□□ -0.64
SFP1	YLR403W	SIC1	P38634	284 aa		11.05	□□□□□ -0.64
SFP1	YLR403W	NNF2	P53253	936 aa		11.05	□□□□□ -0.64
SFP1	YLR403W	MSH3	P25336	1018 aa		11.05	□□□□□ -0.64
SFP1	YLR403W	RAD26	P40352	1085 aa		11.05	□□□□□ -0.64
SFP1	YLR403W	NHA1	Q99271	985 aa		11.05	□□□□□ -0.64
SFP1	YLR403W	CTR9	P89105	1077 aa		11.04	□□□□□ -0.64
SFP1	YLR403W	SNF7	P39929	240 aa	Known RBP	11.04	□□□□□ -0.64
SFP1	YLR403W	ORC1	P54784	914 aa	Predicted RBP	11.04	□□□□□ -0.64
SFP1	YLR403W	CFT1	Q06632	1357 aa	Known RBP	11.03	□□□□□ -0.64
SFP1	YLR403W	SSA1	P10591	642 aa	Known RBP	11.03	□□□□□ -0.64
SFP1	YLR403W	SSA2	P10592	639 aa	Known RBP	11.03	□□□□□ -0.64
SFP1	YLR403W	MSH4	P40965	878 aa	Predicted RBP	11.03	□□□□□ -0.64
SFP1	YLR403W	TOA1	P32773	286 aa		11.02	□□□□□ -0.65
SFP1	YLR403W	YSH1	Q06224	779 aa	Predicted RBP	11.01	□□□□□ -0.65
SFP1	YLR403W	ECM16	Q04217	1267 aa	Known RBP	11	□□□□□ -0.65
SFP1	YLR403W	POL5	P39985	1022 aa	Known RBP	10.97	□□□□□ -0.65
SFP1	YLR403W	SMC3	P47037	1230 aa		10.97	□□□□□ -0.65
SFP1	YLR403W	ECM5	Q03214	1411 aa		10.96	□□□□□ -0.65
SFP1	YLR403W	RPN7	Q06103	429 aa	Known RBP	10.96	□□□□□ -0.65

Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms