Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 TFAMP1-201ENST00000412727 736 ntBASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 AL355306.1-201ENST00000415580 579 ntBASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 EEF1DP4-201ENST00000446006 880 ntBASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 FER1L4-210ENST00000615531 5998 ntBASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.38
LIMA1Q9UHB6 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMA1Q9UHB6 IL9RP2-201ENST00000423948 1312 ntBASIC17.46■□□□□ 0.38
LIMA1Q9UHB6 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
LIMA1Q9UHB6 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 LINC02228-204ENST00000642115 2962 ntBASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 MIR346-201ENST00000362234 95 ntBASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AL671277.1-201ENST00000429656 993 ntBASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 AL450472.2-201ENST00000603663 1156 ntBASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.45■□□□□ 0.38
LIMA1Q9UHB6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 PHKG1P2-201ENST00000457537 863 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 RNA5SP410-201ENST00000516285 106 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 KRT8P37-201ENST00000451609 1420 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 CYP4F24P-201ENST00000586049 1580 ntBASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.44■□□□□ 0.38
LIMA1Q9UHB6 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms