Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC006486.2-201ENST00000624246 2199 ntBASIC16.53■□□□□ 0.24
PCDH9Q9HC56 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC004461.1-201ENST00000412461 403 ntBASIC16.53■□□□□ 0.24
PCDH9Q9HC56 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC004967.1-201ENST00000453589 447 ntBASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDH9Q9HC56 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AL109954.1-202ENST00000564051 2148 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AC105250.1-201ENST00000509378 2057 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 UXT-AS1-201ENST00000590504 1525 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AC254562.1-201ENST00000417586 456 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AP006288.1-201ENST00000446065 395 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AC069335.1-201ENST00000489972 472 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AP000842.3-202ENST00000569238 1080 ntBASIC16.52■□□□□ 0.24
PCDH9Q9HC56 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDH9Q9HC56 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.52■□□□□ 0.23
PCDH9Q9HC56 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PCDH9Q9HC56 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms