Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AL136038.4-201ENST00000603606 1261 ntBASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AC079602.3-201ENST00000623931 403 ntBASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AC133561.5-201ENST00000635547 218 ntBASIC15.13■□□□□ 0.01
NR1H4Q96RI1 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 KRT18P48-201ENST00000434763 852 ntBASIC15.12■□□□□ 0.01
NR1H4Q96RI1 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 AL441883.1-201ENST00000566170 1045 ntBASIC15.12■□□□□ 0.01
NR1H4Q96RI1 LINC01238-205ENST00000567549 1107 ntBASIC15.12■□□□□ 0.01
NR1H4Q96RI1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 AL031432.5-201ENST00000641059 760 ntBASIC15.12■□□□□ 0.01
NR1H4Q96RI1 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.12■□□□□ 0.01
NR1H4Q96RI1 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AC027612.1-201ENST00000445234 2395 ntBASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AL356585.2-201ENST00000625078 2396 ntBASIC15.11■□□□□ 0.01
NR1H4Q96RI1 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AC003669.1-201ENST00000334569 611 ntBASIC15.11■□□□□ 0.01
NR1H4Q96RI1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NR1H4Q96RI1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 AC092135.3-201ENST00000624151 1846 ntBASIC15.1■□□□□ 0.01
NR1H4Q96RI1 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
NR1H4Q96RI1 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms