Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 HIST3H2BA-201ENST00000436555 524 ntBASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 AL390955.2-201ENST00000603032 514 ntBASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 TEX28P1-201ENST00000613479 1221 ntBASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 TEX28P2-201ENST00000617764 1221 ntBASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.81■□□□□ 0.28
SCUBE3Q8IX30 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AP005117.1-202ENST00000581724 1908 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AZGP1P1-201ENST00000411909 902 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 EEF1DP4-201ENST00000446006 880 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 PHKG1P2-201ENST00000457537 863 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 IGHV3-42-201ENST00000520410 361 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 AL590560.3-201ENST00000623350 461 ntBASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SCUBE3Q8IX30 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 AC063926.2-201ENST00000623766 1308 ntBASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 FO393414.2-201ENST00000405153 598 ntBASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.79■□□□□ 0.28
SCUBE3Q8IX30 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms