Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 TOMM22P5-201ENST00000416399 439 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC136604.1-201ENST00000418535 575 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC012497.1-201ENST00000429392 575 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC022210.1-201ENST00000449856 793 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC010319.3-201ENST00000597028 470 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC097359.3-201ENST00000603982 1210 ntBASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RNFT1Q5M7Z0 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 MIR658-201ENST00000385210 100 ntBASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 FAM86LP-201ENST00000478302 853 ntBASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 MIR4259-201ENST00000584466 101 ntBASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AC005786.4-201ENST00000623369 682 ntBASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AP003400.6-201ENST00000624698 740 ntBASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RNFT1Q5M7Z0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 PCDHA14-201ENST00000506751 2298 ntBASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.31□□□□□ -0.12
RNFT1Q5M7Z0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms