Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.15■□□□□ 0.34
VCPP55072 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
VCPP55072 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VCPP55072 AL596257.1-201ENST00000641463 2694 ntBASIC17.15■□□□□ 0.34
VCPP55072 AL603832.2-201ENST00000566195 2125 ntBASIC17.15■□□□□ 0.34
VCPP55072 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.15■□□□□ 0.34
VCPP55072 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.15■□□□□ 0.34
VCPP55072 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCPP55072 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
VCPP55072 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
VCPP55072 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
VCPP55072 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.14■□□□□ 0.33
VCPP55072 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.14■□□□□ 0.33
VCPP55072 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.14■□□□□ 0.33
VCPP55072 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.14■□□□□ 0.33
VCPP55072 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
VCPP55072 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 WASH4P-201ENST00000564273 1246 ntBASIC17.14■□□□□ 0.33
VCPP55072 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.14■□□□□ 0.33
VCPP55072 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.14■□□□□ 0.33
VCPP55072 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
VCPP55072 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 AC132872.4-202ENST00000622924 2756 ntBASIC17.14■□□□□ 0.33
VCPP55072 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.14■□□□□ 0.33
VCPP55072 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VCPP55072 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCPP55072 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.13■□□□□ 0.33
VCPP55072 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 GNAQP1-201ENST00000444815 1067 ntBASIC17.13■□□□□ 0.33
VCPP55072 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.13■□□□□ 0.33
VCPP55072 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.13■□□□□ 0.33
VCPP55072 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.13■□□□□ 0.33
VCPP55072 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.13■□□□□ 0.33
VCPP55072 AC018529.1-201ENST00000613063 361 ntBASIC17.13■□□□□ 0.33
VCPP55072 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.13■□□□□ 0.33
VCPP55072 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.13■□□□□ 0.33
VCPP55072 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VCPP55072 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VCPP55072 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCPP55072 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms