Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDX1P52945 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PDX1P52945 ME2P1-201ENST00000426028 1970 ntBASIC15.53■□□□□ 0.08
PDX1P52945 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PDX1P52945 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PDX1P52945 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PDX1P52945 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.52■□□□□ 0.08
PDX1P52945 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PDX1P52945 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.52■□□□□ 0.08
PDX1P52945 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PDX1P52945 AC098850.1-201ENST00000419919 790 ntBASIC15.52■□□□□ 0.08
PDX1P52945 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.52■□□□□ 0.08
PDX1P52945 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 AC011495.1-201ENST00000498085 584 ntBASIC15.52■□□□□ 0.08
PDX1P52945 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.52■□□□□ 0.08
PDX1P52945 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDX1P52945 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
PDX1P52945 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.52■□□□□ 0.08
PDX1P52945 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.52■□□□□ 0.08
PDX1P52945 AC017083.2-201ENST00000608069 979 ntBASIC15.52■□□□□ 0.08
PDX1P52945 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
PDX1P52945 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PDX1P52945 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.52■□□□□ 0.07
PDX1P52945 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.52■□□□□ 0.07
PDX1P52945 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PDX1P52945 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.52■□□□□ 0.07
PDX1P52945 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PDX1P52945 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDX1P52945 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PDX1P52945 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 GGT3P-204ENST00000453783 1664 ntBASIC15.51■□□□□ 0.07
PDX1P52945 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PDX1P52945 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 AC007326.2-201ENST00000624224 7579 ntBASIC15.51■□□□□ 0.07
PDX1P52945 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.51■□□□□ 0.07
PDX1P52945 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.51■□□□□ 0.07
PDX1P52945 TMEM14DP-201ENST00000422205 345 ntBASIC15.51■□□□□ 0.07
PDX1P52945 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.51■□□□□ 0.07
PDX1P52945 MYCLP2-201ENST00000449268 967 ntBASIC15.51■□□□□ 0.07
PDX1P52945 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.51■□□□□ 0.07
PDX1P52945 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.51■□□□□ 0.07
PDX1P52945 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.51■□□□□ 0.07
PDX1P52945 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 KRT17P8-201ENST00000540749 863 ntBASIC15.51■□□□□ 0.07
PDX1P52945 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.51■□□□□ 0.07
PDX1P52945 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.51■□□□□ 0.07
PDX1P52945 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PDX1P52945 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PDX1P52945 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDX1P52945 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.51■□□□□ 0.07
PDX1P52945 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDX1P52945 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms