Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX3P41225 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX3P41225 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX3P41225 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 SPTSSB-204ENST00000617024 1292 ntBASIC15.12■□□□□ 0.01
SOX3P41225 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX3P41225 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 AC073347.1-201ENST00000421633 2643 ntBASIC15.12■□□□□ 0.01
SOX3P41225 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
SOX3P41225 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 AP3S2-216ENST00000617003 1561 ntBASIC15.11■□□□□ 0.01
SOX3P41225 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 LINC02228-204ENST00000642115 2962 ntBASIC15.11■□□□□ 0.01
SOX3P41225 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.11■□□□□ 0.01
SOX3P41225 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 SPDYE7P-202ENST00000420373 878 ntBASIC15.11■□□□□ 0.01
SOX3P41225 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 AC093724.1-201ENST00000448659 1027 ntBASIC15.11■□□□□ 0.01
SOX3P41225 AC067863.1-201ENST00000494933 530 ntBASIC15.11■□□□□ 0.01
SOX3P41225 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.11■□□□□ 0.01
SOX3P41225 RARRES2P9-201ENST00000565168 469 ntBASIC15.11■□□□□ 0.01
SOX3P41225 AC015911.4-201ENST00000588022 1070 ntBASIC15.11■□□□□ 0.01
SOX3P41225 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.11■□□□□ 0.01
SOX3P41225 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.11■□□□□ 0.01
SOX3P41225 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
SOX3P41225 TUBB3P1-201ENST00000405796 1332 ntBASIC15.11■□□□□ 0.01
SOX3P41225 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.11■□□□□ 0.01
SOX3P41225 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SOX3P41225 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.1■□□□□ 0.01
SOX3P41225 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX3P41225 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 HLA-H-201ENST00000383620 1096 ntBASIC15.1■□□□□ 0.01
SOX3P41225 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.1■□□□□ 0.01
SOX3P41225 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.1■□□□□ 0.01
SOX3P41225 AC098859.1-201ENST00000502915 1238 ntBASIC15.1■□□□□ 0.01
SOX3P41225 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.1■□□□□ 0.01
SOX3P41225 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms