Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 SPDYE19P-201ENST00000338590 713 ntBASIC15.2■□□□□ 0.02
RORAP35398 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.2■□□□□ 0.02
RORAP35398 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.2■□□□□ 0.02
RORAP35398 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.2■□□□□ 0.02
RORAP35398 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.2■□□□□ 0.02
RORAP35398 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 SRD5A3P1-201ENST00000603021 949 ntBASIC15.2■□□□□ 0.02
RORAP35398 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.2■□□□□ 0.02
RORAP35398 AC004461.2-201ENST00000629517 803 ntBASIC15.2■□□□□ 0.02
RORAP35398 AL109936.8-201ENST00000641772 604 ntBASIC15.2■□□□□ 0.02
RORAP35398 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RORAP35398 AL391825.1-201ENST00000457671 1364 ntBASIC15.2■□□□□ 0.02
RORAP35398 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 REXO1L8P-201ENST00000604378 1897 ntBASIC15.2■□□□□ 0.02
RORAP35398 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.2■□□□□ 0.02
RORAP35398 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RORAP35398 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.19■□□□□ 0.02
RORAP35398 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.19■□□□□ 0.02
RORAP35398 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.19■□□□□ 0.02
RORAP35398 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.19■□□□□ 0.02
RORAP35398 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.19■□□□□ 0.02
RORAP35398 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.19■□□□□ 0.02
RORAP35398 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
RORAP35398 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RORAP35398 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.18■□□□□ 0.02
RORAP35398 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
RORAP35398 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 AL691432.1-201ENST00000596308 1422 ntBASIC15.18■□□□□ 0.02
RORAP35398 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.18■□□□□ 0.02
RORAP35398 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.18■□□□□ 0.02
RORAP35398 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
RORAP35398 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
RORAP35398 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.18■□□□□ 0.02
RORAP35398 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RORAP35398 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms