Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CIITAP33076 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CIITAP33076 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CIITAP33076 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CIITAP33076 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.91■□□□□ 0.46
CIITAP33076 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CIITAP33076 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CIITAP33076 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.91■□□□□ 0.46
CIITAP33076 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.91■□□□□ 0.46
CIITAP33076 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.91■□□□□ 0.46
CIITAP33076 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CIITAP33076 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CIITAP33076 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.91■□□□□ 0.46
CIITAP33076 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.91■□□□□ 0.46
CIITAP33076 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CIITAP33076 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CIITAP33076 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CIITAP33076 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 DFFBP1-201ENST00000433250 979 ntBASIC17.9■□□□□ 0.46
CIITAP33076 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.9■□□□□ 0.46
CIITAP33076 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
CIITAP33076 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.9■□□□□ 0.46
CIITAP33076 AC023310.3-201ENST00000557027 670 ntBASIC17.9■□□□□ 0.46
CIITAP33076 AC100756.1-201ENST00000562736 682 ntBASIC17.9■□□□□ 0.46
CIITAP33076 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 AC138749.3-201ENST00000567691 622 ntBASIC17.9■□□□□ 0.46
CIITAP33076 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.9■□□□□ 0.46
CIITAP33076 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 LINC02084-201ENST00000606069 1096 ntBASIC17.9■□□□□ 0.46
CIITAP33076 AC004233.3-201ENST00000607794 1269 ntBASIC17.9■□□□□ 0.46
CIITAP33076 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 AC116165.1-201ENST00000611806 668 ntBASIC17.9■□□□□ 0.46
CIITAP33076 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CIITAP33076 AP005117.1-202ENST00000581724 1908 ntBASIC17.9■□□□□ 0.46
CIITAP33076 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.9■□□□□ 0.46
CIITAP33076 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.89■□□□□ 0.46
CIITAP33076 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.46
CIITAP33076 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.89■□□□□ 0.46
CIITAP33076 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.89■□□□□ 0.46
CIITAP33076 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms