Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC092474.2-201ENST00000424288 719 ntBASIC12.25□□□□□ -0.45
HLA-DMBP28068 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC010327.4-202ENST00000591484 748 ntBASIC12.25□□□□□ -0.45
HLA-DMBP28068 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
HLA-DMBP28068 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DMBP28068 SSR4P1-203ENST00000599569 2260 ntBASIC12.25□□□□□ -0.45
HLA-DMBP28068 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 YBX2P1-201ENST00000394192 760 ntBASIC12.24□□□□□ -0.45
HLA-DMBP28068 PMP22-202ENST00000395936 816 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 UPF3AP3-201ENST00000420996 769 ntBASIC12.24□□□□□ -0.45
HLA-DMBP28068 FIS1-203ENST00000442303 631 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 KRT18P2-201ENST00000447938 1258 ntBASIC12.24□□□□□ -0.45
HLA-DMBP28068 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 AC109635.5-201ENST00000533593 962 ntBASIC12.24□□□□□ -0.45
HLA-DMBP28068 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 AC007064.4-201ENST00000637740 555 ntBASIC12.24□□□□□ -0.45
HLA-DMBP28068 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HLA-DMBP28068 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HLA-DMBP28068 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms