Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH3P22223 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH3P22223 GGT3P-204ENST00000453783 1664 ntBASIC15.76■□□□□ 0.11
CDH3P22223 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.76■□□□□ 0.11
CDH3P22223 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 FAM220BP-201ENST00000377689 816 ntBASIC15.76■□□□□ 0.11
CDH3P22223 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.76■□□□□ 0.11
CDH3P22223 IGHV3-42-201ENST00000520410 361 ntBASIC15.76■□□□□ 0.11
CDH3P22223 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.76■□□□□ 0.11
CDH3P22223 AC140878.1-201ENST00000565277 250 ntBASIC15.76■□□□□ 0.11
CDH3P22223 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
CDH3P22223 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CDH3P22223 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH3P22223 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH3P22223 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CDH3P22223 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH3P22223 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 LINC01144-201ENST00000626198 1710 ntBASIC15.75■□□□□ 0.11
CDH3P22223 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 AL353705.2-201ENST00000428243 662 ntBASIC15.75■□□□□ 0.11
CDH3P22223 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.75■□□□□ 0.11
CDH3P22223 AC069120.2-201ENST00000524091 540 ntBASIC15.75■□□□□ 0.11
CDH3P22223 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH3P22223 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 FLJ16779-201ENST00000612722 7638 ntBASIC15.75■□□□□ 0.11
CDH3P22223 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.75■□□□□ 0.11
CDH3P22223 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH3P22223 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDH3P22223 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH3P22223 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH3P22223 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH3P22223 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH3P22223 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms