Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 AP003680.1-201ENST00000598970 3660 ntBASIC15.31■□□□□ 0.04
BRF2Q9HAW0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 AC105250.1-201ENST00000509378 2057 ntBASIC15.31■□□□□ 0.04
BRF2Q9HAW0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.31■□□□□ 0.04
BRF2Q9HAW0 AC092850.2-201ENST00000623821 2697 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 KRT18P32-201ENST00000424695 1287 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AL353705.2-201ENST00000428243 662 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 PHKG1P2-201ENST00000457537 863 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 ALG1L8P-201ENST00000533887 760 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MIR3687-2-201ENST00000577708 61 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MIR4313-201ENST00000580760 101 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MIR4469-201ENST00000583919 79 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MIR3687-1-201ENST00000614492 61 ntBASIC15.3■□□□□ 0.04
BRF2Q9HAW0 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BRF2Q9HAW0 AC018892.3-201ENST00000623986 2499 ntBASIC15.29■□□□□ 0.04
BRF2Q9HAW0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.29■□□□□ 0.04
BRF2Q9HAW0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AC004461.1-201ENST00000412461 403 ntBASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AL627223.1-201ENST00000416693 442 ntBASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AP000347.1-202ENST00000435868 847 ntBASIC15.29■□□□□ 0.04
BRF2Q9HAW0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
BRF2Q9HAW0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms