Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 AL138966.2-201ENST00000621997 464 ntBASIC15.15■□□□□ 0.02
NR1H4Q96RI1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.15■□□□□ 0.02
NR1H4Q96RI1 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 DGCR9-201ENST00000609630 2415 ntBASIC15.15■□□□□ 0.02
NR1H4Q96RI1 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H4Q96RI1 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 CICP8-201ENST00000455800 2813 ntBASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.14■□□□□ 0.01
NR1H4Q96RI1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 AP003733.1-201ENST00000491725 852 ntBASIC15.14■□□□□ 0.01
NR1H4Q96RI1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 AC010203.1-204ENST00000548782 407 ntBASIC15.14■□□□□ 0.01
NR1H4Q96RI1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H4Q96RI1 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 COX11P1-201ENST00000489116 835 ntBASIC15.13■□□□□ 0.01
NR1H4Q96RI1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NR1H4Q96RI1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms