Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 RNA5SP410-201ENST00000516285 106 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 KRT8P23-201ENST00000560090 1207 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 BX640515.1-201ENST00000617215 977 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 AC091812.2-201ENST00000619081 385 ntBASIC18.27■□□□□ 0.52
ATL3Q6DD88 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.27■□□□□ 0.52
ATL3Q6DD88 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATL3Q6DD88 FER1L4-210ENST00000615531 5998 ntBASIC18.27■□□□□ 0.51
ATL3Q6DD88 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ATL3Q6DD88 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATL3Q6DD88 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATL3Q6DD88 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ATL3Q6DD88 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATL3Q6DD88 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 TSPY26P-202ENST00000565928 3884 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ADH5P3-201ENST00000433842 1137 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC243562.1-201ENST00000560672 389 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 LINC01225-203ENST00000563550 1244 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC106730.1-201ENST00000566722 1090 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 AP000842.3-202ENST00000569238 1080 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC026979.3-201ENST00000607315 403 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC084121.4-201ENST00000641598 221 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 AF228730.8-201ENST00000642140 221 ntBASIC18.26■□□□□ 0.51
ATL3Q6DD88 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.26■□□□□ 0.51
ATL3Q6DD88 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATL3Q6DD88 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 CYP4F24P-201ENST00000586049 1580 ntBASIC18.25■□□□□ 0.51
ATL3Q6DD88 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 AC092902.6-201ENST00000641783 218 ntBASIC18.25■□□□□ 0.51
ATL3Q6DD88 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 AC023824.1-201ENST00000562945 2975 ntBASIC18.25■□□□□ 0.51
ATL3Q6DD88 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ATL3Q6DD88 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
ATL3Q6DD88 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ATL3Q6DD88 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ATL3Q6DD88 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.24■□□□□ 0.51
ATL3Q6DD88 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ATL3Q6DD88 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms