Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.92□□□□□ -0.18
UBA52P62987 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
UBA52P62987 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.92□□□□□ -0.18
UBA52P62987 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
UBA52P62987 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.92□□□□□ -0.18
UBA52P62987 STK19B-204ENST00000512515 211 ntBASIC13.92□□□□□ -0.18
UBA52P62987 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.92□□□□□ -0.18
UBA52P62987 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.92□□□□□ -0.18
UBA52P62987 AC096734.2-201ENST00000562054 433 ntBASIC13.92□□□□□ -0.18
UBA52P62987 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
UBA52P62987 AC019129.2-201ENST00000609837 1235 ntBASIC13.92□□□□□ -0.18
UBA52P62987 GGTLC5P-201ENST00000617623 998 ntBASIC13.92□□□□□ -0.18
UBA52P62987 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.92□□□□□ -0.18
UBA52P62987 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UBA52P62987 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
UBA52P62987 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
UBA52P62987 PCDHA3-202ENST00000532566 4594 ntBASIC13.91□□□□□ -0.18
UBA52P62987 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 AC023908.3-201ENST00000564211 3047 ntBASIC13.91□□□□□ -0.18
UBA52P62987 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 AL359258.3-201ENST00000622910 2331 ntBASIC13.91□□□□□ -0.18
UBA52P62987 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.91□□□□□ -0.18
UBA52P62987 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.91□□□□□ -0.18
UBA52P62987 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.91□□□□□ -0.18
UBA52P62987 KRT19P2-202ENST00000557173 1012 ntBASIC13.91□□□□□ -0.18
UBA52P62987 AL031432.2-201ENST00000566714 459 ntBASIC13.91□□□□□ -0.18
UBA52P62987 AL928711.1-201ENST00000570165 459 ntBASIC13.91□□□□□ -0.18
UBA52P62987 AC092364.2-202ENST00000597012 1073 ntBASIC13.91□□□□□ -0.18
UBA52P62987 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
UBA52P62987 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.91□□□□□ -0.18
UBA52P62987 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 EGFEM1P-202ENST00000431685 1563 ntBASIC13.91□□□□□ -0.18
UBA52P62987 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.91□□□□□ -0.18
UBA52P62987 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
UBA52P62987 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
UBA52P62987 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.9□□□□□ -0.18
UBA52P62987 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
UBA52P62987 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.9□□□□□ -0.18
UBA52P62987 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
UBA52P62987 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms