Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.82■□□□□ 0.12
SRP54P61011 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SRP54P61011 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SRP54P61011 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.82■□□□□ 0.12
SRP54P61011 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.82■□□□□ 0.12
SRP54P61011 AGGF1P2-201ENST00000426656 2106 ntBASIC15.82■□□□□ 0.12
SRP54P61011 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SRP54P61011 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.82■□□□□ 0.12
SRP54P61011 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
SRP54P61011 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
SRP54P61011 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
SRP54P61011 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 AC004987.2-201ENST00000395959 1148 ntBASIC15.81■□□□□ 0.12
SRP54P61011 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 SPDYE18-201ENST00000510091 1050 ntBASIC15.81■□□□□ 0.12
SRP54P61011 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.81■□□□□ 0.12
SRP54P61011 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.81■□□□□ 0.12
SRP54P61011 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SRP54P61011 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
SRP54P61011 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.81■□□□□ 0.12
SRP54P61011 AC004461.2-201ENST00000629517 803 ntBASIC15.81■□□□□ 0.12
SRP54P61011 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SRP54P61011 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
SRP54P61011 TSPY26P-202ENST00000565928 3884 ntBASIC15.81■□□□□ 0.12
SRP54P61011 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.81■□□□□ 0.12
SRP54P61011 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.8■□□□□ 0.12
SRP54P61011 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.8■□□□□ 0.12
SRP54P61011 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
SRP54P61011 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.8■□□□□ 0.12
SRP54P61011 DFFBP1-201ENST00000433250 979 ntBASIC15.8■□□□□ 0.12
SRP54P61011 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 API5-211ENST00000534695 560 ntTSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 AC243562.2-201ENST00000561247 970 ntBASIC15.8■□□□□ 0.12
SRP54P61011 AL596325.1-201ENST00000563991 1082 ntBASIC15.8■□□□□ 0.12
SRP54P61011 SRD5A3P1-201ENST00000603021 949 ntBASIC15.8■□□□□ 0.12
SRP54P61011 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SRP54P61011 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.8■□□□□ 0.12
SRP54P61011 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 AC068418.2-201ENST00000577309 3703 ntBASIC15.8■□□□□ 0.12
SRP54P61011 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SRP54P61011 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms