Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXC12P31275 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXC12P31275 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.26□□□□□ -0.13
HOXC12P31275 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXC12P31275 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
HOXC12P31275 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXC12P31275 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.26□□□□□ -0.13
HOXC12P31275 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 TNRC18P3-201ENST00000441896 2691 ntBASIC14.26□□□□□ -0.13
HOXC12P31275 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HOXC12P31275 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXC12P31275 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
HOXC12P31275 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXC12P31275 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.25□□□□□ -0.13
HOXC12P31275 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXC12P31275 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXC12P31275 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXC12P31275 AC007967.4-201ENST00000614700 386 ntBASIC14.25□□□□□ -0.13
HOXC12P31275 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXC12P31275 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXC12P31275 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXC12P31275 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXC12P31275 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXC12P31275 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXC12P31275 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXC12P31275 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
HOXC12P31275 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 AC092171.3-201ENST00000610122 2651 ntBASIC14.24□□□□□ -0.13
HOXC12P31275 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXC12P31275 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HOXC12P31275 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXC12P31275 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HOXC12P31275 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXC12P31275 ATP5G2P4-201ENST00000442175 420 ntBASIC14.24□□□□□ -0.13
HOXC12P31275 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXC12P31275 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.24□□□□□ -0.13
HOXC12P31275 MIR4453-201ENST00000584019 89 ntBASIC14.24□□□□□ -0.13
HOXC12P31275 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXC12P31275 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXC12P31275 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms