Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.98■□□□□ 0.15
MSH3P20585 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.98■□□□□ 0.15
MSH3P20585 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.98■□□□□ 0.15
MSH3P20585 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 AC105021.1-202ENST00000570572 669 ntBASIC15.98■□□□□ 0.15
MSH3P20585 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.98■□□□□ 0.15
MSH3P20585 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 AL035456.1-201ENST00000456064 1369 ntBASIC15.98■□□□□ 0.15
MSH3P20585 AC105917.1-201ENST00000506637 2539 ntBASIC15.98■□□□□ 0.15
MSH3P20585 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
MSH3P20585 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.98■□□□□ 0.15
MSH3P20585 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.98■□□□□ 0.15
MSH3P20585 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSH3P20585 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 AC024909.3-201ENST00000611513 2257 ntBASIC15.97■□□□□ 0.15
MSH3P20585 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.97■□□□□ 0.15
MSH3P20585 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.97■□□□□ 0.15
MSH3P20585 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.97■□□□□ 0.15
MSH3P20585 PMS2P2-201ENST00000425039 1128 ntBASIC15.97■□□□□ 0.15
MSH3P20585 AL645939.2-201ENST00000427340 991 ntBASIC15.97■□□□□ 0.15
MSH3P20585 MTND6P24-201ENST00000440466 518 ntBASIC15.97■□□□□ 0.15
MSH3P20585 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 AC125807.1-201ENST00000483097 614 ntBASIC15.97■□□□□ 0.15
MSH3P20585 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.97■□□□□ 0.15
MSH3P20585 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.97■□□□□ 0.15
MSH3P20585 AC243562.2-201ENST00000561247 970 ntBASIC15.97■□□□□ 0.15
MSH3P20585 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.97■□□□□ 0.15
MSH3P20585 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.97■□□□□ 0.15
MSH3P20585 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
MSH3P20585 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
MSH3P20585 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
MSH3P20585 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.97■□□□□ 0.15
MSH3P20585 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSH3P20585 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
MSH3P20585 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
MSH3P20585 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
MSH3P20585 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
MSH3P20585 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSH3P20585 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
MSH3P20585 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
MSH3P20585 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.96■□□□□ 0.15
MSH3P20585 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.96■□□□□ 0.15
MSH3P20585 KLF2P3-201ENST00000451977 1087 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms