Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CXCL1P09341 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CXCL1P09341 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.49□□□□□ -0.41
CXCL1P09341 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CXCL1P09341 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CXCL1P09341 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 AC097376.2-205ENST00000610159 5334 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 AL512652.2-201ENST00000625156 1716 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 AC008677.1-201ENST00000519230 1561 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 UBC-206ENST00000538617 1303 ntTSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
CXCL1P09341 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.48□□□□□ -0.41
CXCL1P09341 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 VENTXP5-201ENST00000523979 775 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.48□□□□□ -0.41
CXCL1P09341 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 AL592071.1-201ENST00000611956 408 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.48□□□□□ -0.41
CXCL1P09341 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 AC132938.5-201ENST00000624980 1813 ntBASIC12.48□□□□□ -0.41
CXCL1P09341 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CXCL1P09341 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CXCL1P09341 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CXCL1P09341 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.47□□□□□ -0.41
CXCL1P09341 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CXCL1P09341 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.47□□□□□ -0.41
CXCL1P09341 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CXCL1P09341 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.47□□□□□ -0.41
CXCL1P09341 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
CXCL1P09341 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
CXCL1P09341 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.47□□□□□ -0.41
CXCL1P09341 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CXCL1P09341 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms