Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HOXD4P09016 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HOXD4P09016 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 NME2P1-201ENST00000426182 414 ntBASIC14.58□□□□□ -0.08
HOXD4P09016 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 AL079307.3-201ENST00000556114 283 ntBASIC14.58□□□□□ -0.08
HOXD4P09016 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.58□□□□□ -0.08
HOXD4P09016 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.58□□□□□ -0.08
HOXD4P09016 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 AC004233.3-201ENST00000607794 1269 ntBASIC14.58□□□□□ -0.08
HOXD4P09016 TEX28P1-201ENST00000613479 1221 ntBASIC14.58□□□□□ -0.08
HOXD4P09016 TEX28P2-201ENST00000617764 1221 ntBASIC14.58□□□□□ -0.08
HOXD4P09016 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.58□□□□□ -0.08
HOXD4P09016 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HOXD4P09016 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
HOXD4P09016 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HOXD4P09016 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HOXD4P09016 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 AC006538.1-201ENST00000567905 1585 ntBASIC14.57□□□□□ -0.08
HOXD4P09016 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 OR8S1-201ENST00000310194 1080 ntBASIC14.57□□□□□ -0.08
HOXD4P09016 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HOXD4P09016 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.57□□□□□ -0.08
HOXD4P09016 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
HOXD4P09016 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
HOXD4P09016 AC009477.1-201ENST00000452936 217 ntBASIC14.57□□□□□ -0.08
HOXD4P09016 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
HOXD4P09016 AL596325.1-201ENST00000563991 1082 ntBASIC14.57□□□□□ -0.08
HOXD4P09016 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HOXD4P09016 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.57□□□□□ -0.08
HOXD4P09016 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HOXD4P09016 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms