Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM38O00635 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TRIM38O00635 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
TRIM38O00635 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM38O00635 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM38O00635 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 AC007967.4-201ENST00000614700 386 ntBASIC16.17■□□□□ 0.18
TRIM38O00635 AL138828.2-201ENST00000615812 383 ntBASIC16.17■□□□□ 0.18
TRIM38O00635 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM38O00635 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM38O00635 AL596087.1-201ENST00000400979 1969 ntBASIC16.17■□□□□ 0.18
TRIM38O00635 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM38O00635 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM38O00635 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.16■□□□□ 0.18
TRIM38O00635 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM38O00635 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM38O00635 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM38O00635 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 AL603832.2-201ENST00000566195 2125 ntBASIC16.15■□□□□ 0.18
TRIM38O00635 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 GK-202ENST00000378941 458 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.15■□□□□ 0.18
TRIM38O00635 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms