Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
COL6A5A8TX70 CD276-201ENST00000318424 2738 ntTSL 5 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
COL6A5A8TX70 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AC005622.1-201ENST00000636801 1703 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 POM121L8P-201ENST00000417732 1281 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 BRI3P1-201ENST00000440440 378 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 POM121L9P-203ENST00000441984 1285 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AC093503.3-201ENST00000624917 2352 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AL645728.1-201ENST00000366221 2101 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
COL6A5A8TX70 AL691432.1-201ENST00000596308 1422 ntBASIC12.16□□□□□ -0.46
COL6A5A8TX70 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 BNIP3P1-202ENST00000550043 1585 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC103988.2-201ENST00000561804 725 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC021016.3-201ENST00000608367 477 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC138466.5-201ENST00000624002 808 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC233280.19-201ENST00000633223 136 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms