Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 NKAIN1P1-201ENST00000435754 582 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 GAPDHP40-201ENST00000505218 1006 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 AC044849.1-201ENST00000519737 1188 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 MIR7845-201ENST00000618396 99 ntBASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ZNF541Q9H0D2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 HLA-A-202ENST00000376806 1854 ntBASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 AL354989.2-201ENST00000435838 1540 ntBASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CD8B2-202ENST00000417670 633 ntBASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 FGFR3P5-201ENST00000564496 886 ntBASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CU633904.3-201ENST00000624042 1029 ntBASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF541Q9H0D2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF541Q9H0D2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms